View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16711_low_7 (Length: 403)
Name: NF16711_low_7
Description: NF16711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16711_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 344
Target Start/End: Complemental strand, 43426283 - 43425942
Alignment:
| Q |
1 |
aaagatgaattatttaagattgtcttt-attctttccaatgcaaatttaagattggtacgtaccttcttcaattttattccaattttgagtaaaagttaa |
99 |
Q |
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| T |
43426283 |
aaagatgaattatttaagattgttttttattctttccgatgcaaatttaagattggtacgtaccttcttcaattttattccaattttgagtaaaagttaa |
43426184 |
T |
|
| Q |
100 |
gttaatgtgcaataacatcaagcacaaaag-nnnnnnnnnnnnactagatcaaatcacattaatacttagatgtgatatttttaatgttctctcatcata |
198 |
Q |
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| T |
43426183 |
gttaatgtgcaataacatcaagcacaaaagtttttttttttttactagatcaaatcacattaatacttagatgtgatatttttaatgttctctcatcata |
43426084 |
T |
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| Q |
199 |
atttcacacacatgatccatcnnnnnnnnnnnntttatcacacatggactgtgtgttagaatcatctgaaaaatttaatccacacgaaactcactaatta |
298 |
Q |
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| T |
43426083 |
atttcacacacatgatccatcaaaaagaaaaaatttatcacacatggactgtgtgttagaatcatctgaaaaatttaatccacacgaaactcac----ta |
43425988 |
T |
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| Q |
299 |
agtccccacaataactctcaaaattgatcatttctcacaaattaag |
344 |
Q |
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| T |
43425987 |
agtccccacaataactctcacaattgatcatttctcacaaattaag |
43425942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 353 - 388
Target Start/End: Complemental strand, 43425918 - 43425883
Alignment:
| Q |
353 |
gatgagtagtgatttttctaattcacccttatatat |
388 |
Q |
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| T |
43425918 |
gatgagtagtgatttttctaattcacccttatatat |
43425883 |
T |
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