View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16712_high_11 (Length: 257)
Name: NF16712_high_11
Description: NF16712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16712_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 19 - 175
Target Start/End: Original strand, 24572393 - 24572549
Alignment:
| Q |
19 |
aagaaatggatgtcagttaataattgatgtcatcttaatgtaattttatgagaaaacttgaggaaactatcaaatcacaaagtgtgaaaacataagtgga |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
24572393 |
aagaaatggatgtcagttaataattgatgtcatcttaatgtaattttaggagaaaacttgaggaaactatcaaatcacaaagtgtgaaaacataaatgga |
24572492 |
T |
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| Q |
119 |
caaaattgttaaaaataaagtggtaggccaaaatcgctcaatctgtatacattggtt |
175 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24572493 |
caaaattgttaaaaataaagtggtaggccaaaatcgctcaatctgtatacattggtt |
24572549 |
T |
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