View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16712_high_13 (Length: 238)

Name: NF16712_high_13
Description: NF16712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16712_high_13
NF16712_high_13
[»] chr8 (8 HSPs)
chr8 (5-221)||(13024998-13025214)
chr8 (99-156)||(12712113-12712170)
chr8 (9-156)||(18096323-18096470)
chr8 (99-148)||(6117562-6117611)
chr8 (95-156)||(18139784-18139845)
chr8 (98-154)||(12724620-12724676)
chr8 (101-148)||(12705461-12705508)
chr8 (1-74)||(18081889-18081962)
[»] chr1 (2 HSPs)
chr1 (97-169)||(17747850-17747923)
chr1 (96-163)||(22535498-22535565)


Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 5 - 221
Target Start/End: Complemental strand, 13025214 - 13024998
Alignment:
Q  5 ccggacaaggatgatcctttttgggagagagatgtgcacgagctggatttgaatgacagtttttgggaggnnnnnnngctcatattcaacttgtatgacc 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||    
T  13025214 ccggacaaggatgatcctttttgggagagagatgtgcacgagctggatttgaatgacagtttttgggaggaaaaaaagctcatattcaacttgtatgacc 13025115  T
Q  105 ctttctcggagatttatagcctcaaaagtaattcttggaggaaactcgatggggttgatatgcctgcttcttgcccacattctctcgtgaacatgaatgg 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  13025114 ctttctcggagatttatagcctcaaaagtaattcttggaggaaactcgatggggttgatatgcctgcttcttgcccacgttctctcgtgaacatgaatgg 13025015  T
Q  205 attttgccattggttgt 221  Q
    |||||||||||||||||    
T  13025014 attttgccattggttgt 13024998  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 99 - 156
Target Start/End: Complemental strand, 12712170 - 12712113
Alignment:
Q  99 atgaccctttctcggagatttatagcctcaaaagtaattcttggaggaaactcgatgg 156  Q
    |||||||||||| |||||| ||||||||||||||||| |||||||||||| |||||||    
T  12712170 atgaccctttctgggagatatatagcctcaaaagtaactcttggaggaaaatcgatgg 12712113  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 156
Target Start/End: Original strand, 18096323 - 18096470
Alignment:
Q  9 acaaggatgatcctttttgggagagagatgtgcacgagctggatttgaatgacagtttttgggaggnnnnnnngctcatattcaacttgtatgacccttt 108  Q
    |||||||||| |||||||||||||  ||||| ||| | || ||  |||||||| ||||||||||||       ||||||  |||| |||||||| || ||    
T  18096323 acaaggatgaccctttttgggagactgatgtacacaaccttgacatgaatgacggtttttgggaggagaaggggctcattgtcaagttgtatgaaccatt 18096422  T
Q  109 ctcggagatttatagcctcaaaagtaattcttggaggaaactcgatgg 156  Q
     | |||||| |||||||||||  || |||||||||||||||| |||||    
T  18096423 ttgggagatgtatagcctcaagcgtgattcttggaggaaacttgatgg 18096470  T

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Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 99 - 148
Target Start/End: Original strand, 6117562 - 6117611
Alignment:
Q  99 atgaccctttctcggagatttatagcctcaaaagtaattcttggaggaaa 148  Q
    |||||||||||| |||||| ||||||||||||||||| ||||||||||||    
T  6117562 atgaccctttctgggagatatatagcctcaaaagtaactcttggaggaaa 6117611  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 95 - 156
Target Start/End: Complemental strand, 18139845 - 18139784
Alignment:
Q  95 ttgtatgaccctttctcggagatttatagcctcaaaagtaattcttggaggaaactcgatgg 156  Q
    |||||||| ||||| | |||||| ||||| ||||||||| |||||||||||||||| |||||    
T  18139845 ttgtatgaacctttttgggagatatatagtctcaaaagtgattcttggaggaaacttgatgg 18139784  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 154
Target Start/End: Original strand, 12724620 - 12724676
Alignment:
Q  98 tatgaccctttctcggagatttatagcctcaaaagtaattcttggaggaaactcgat 154  Q
    ||||| || |||| |||||| |||||||||| |||||| ||||||||||||||||||    
T  12724620 tatgaaccattcttggagatatatagcctcagaagtaactcttggaggaaactcgat 12724676  T

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Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 101 - 148
Target Start/End: Original strand, 12705461 - 12705508
Alignment:
Q  101 gaccctttctcggagatttatagcctcaaaagtaattcttggaggaaa 148  Q
    |||||||||| |||| | ||||||||||||||||| ||||||||||||    
T  12705461 gaccctttctgggagttatatagcctcaaaagtaactcttggaggaaa 12705508  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 18081889 - 18081962
Alignment:
Q  1 tttgccggacaaggatgatcctttttgggagagagatgtgcacgagctggatttgaatgacagtttttgggagg 74  Q
    |||||||||||||||||| |||||||||||||  ||||| ||| | || || |||| ||||  |||||||||||    
T  18081889 tttgccggacaaggatgaccctttttgggagattgatgtacaccaccttgacttgattgacgatttttgggagg 18081962  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 97 - 169
Target Start/End: Original strand, 17747850 - 17747923
Alignment:
Q  97 gtatgaccctttctcggagatttatagcctcaaaagtaattcttggaggaaac-tcgatggggttgatatgcct 169  Q
    ||||||||||||||  ||||| |||||||||| |||||| ||||||||||||| || |||||||||||||||||    
T  17747850 gtatgaccctttctgtgagatatatagcctcataagtaactcttggaggaaacttcaatggggttgatatgcct 17747923  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 96 - 163
Target Start/End: Complemental strand, 22535565 - 22535498
Alignment:
Q  96 tgtatgaccctttctcggagatttatagcctcaaaagtaattcttggaggaaactcgatggggttgat 163  Q
    ||||||||||||| | |||||| || ||||| | |||||| |||||||||||||| ||||| ||||||    
T  22535565 tgtatgaccctttttgggagatatacagccttagaagtaactcttggaggaaacttgatggtgttgat 22535498  T

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