View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16712_high_2 (Length: 479)
Name: NF16712_high_2
Description: NF16712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16712_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 14 - 429
Target Start/End: Original strand, 25390758 - 25391168
Alignment:
| Q |
14 |
gaagggaagcaagtcaagataaatttgcagaagcagagcacacacgcttatatagaagaaccaagtcctttgataatacaagtcccacatcggatgtatt |
113 |
Q |
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| T |
25390758 |
gaagggaagcaagtcaagataaatttgcagaagtagagcacacacgcttatatagaagaaccaagtccattgataatacaagtcccacatcggatgtatt |
25390857 |
T |
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| Q |
114 |
acaagcatacataggcaaactgcaatataaataagtgtgcaacataagtcatggtcaaacaaagttccttgcgttgcatagtat---ttgtatcatgtgt |
210 |
Q |
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| T |
25390858 |
acaagcttacataggcaaactgcaatataaataagtgtgcaacataagtcatggtcaaacaaagtcccttgcattgcatagtatgcattgcatgatgtgt |
25390957 |
T |
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| Q |
211 |
gacaatgtgacaatgtttctcacttttctctatccaatgtcaatggaaaggaatagttgatttgtttaaaatccattggtactgtagttaagttatagac |
310 |
Q |
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| T |
25390958 |
g--------acaatgtttctcacttttctctttccaatgtcaatggaatggaatagttgatttgtttaaagtccattgttactatagttaagttatagac |
25391049 |
T |
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| Q |
311 |
gtggtatatttttgttgttgtctttaataattagcataacttgcaatttatcaagaacaactgcataaatatattacttatatcttaaaacctaattcaa |
410 |
Q |
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| T |
25391050 |
gtagtatatttttgttgttgtccttaataattagcataatttgcaatttattcagaacaattgcataaatatattacttatatcttaaaacctaattcaa |
25391149 |
T |
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| Q |
411 |
tacaccaaacttatttttt |
429 |
Q |
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| T |
25391150 |
tacaccaaacttatttttt |
25391168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 64 - 198
Target Start/End: Original strand, 25393647 - 25393782
Alignment:
| Q |
64 |
tatagaagaaccaagtcctttgataatacaagtcccacatcggatgtattacaagcatacataggcaaactgcaatataaataagtgtgcaacat-aagt |
162 |
Q |
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| T |
25393647 |
tatagaagaaccaagtccattgataatacaagtcccacatcggatgtactacaagcttacataggcaaactgcaatataaataagcgtgcaacatctaga |
25393746 |
T |
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| Q |
163 |
catggtcaaacaaagttccttgcgttgcatagtatt |
198 |
Q |
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| T |
25393747 |
caaggtaaaaccaagtcccttgcgttgcatagtatt |
25393782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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