View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16712_low_1 (Length: 520)
Name: NF16712_low_1
Description: NF16712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16712_low_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 488; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 18 - 513
Target Start/End: Original strand, 10335318 - 10335813
Alignment:
| Q |
18 |
actggtccaacaacctatcctgtaataggttgtttaatatctttctacaagaatcgttttcggttgctagactggtataccaagcttttagcccaatcgc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
10335318 |
actggtccaacaacctatcctgtaataggttgtttaatatctttctacaagaatcgttttcggttgctagattggtataccaagcttttagcccaatcgc |
10335417 |
T |
|
| Q |
118 |
caaccaataccatattggttcaacgattaggcgcacgtagaaccattgtaacggcaaatcaacacaacgtcgaatatgtgctcaagaccaatttcaaaaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10335418 |
caaccaataccatattggttcaacgattaggcgcacgtagaaccattgtaacggcaaatcaacacaacgtcgaatatgtgctcaagaccaatttcaaaaa |
10335517 |
T |
|
| Q |
218 |
cttccccaaagggaagccttttagggagatccttagtgatttccttggaaaaggtatattcaatgtggacgacgatttatggatgatacagcgaaaactc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10335518 |
cttccccaaagggaagccttttagggagatccttagtgatttccttggaaaaggtatattcaatgtggacgacgatttatggatgatacagcgaaaactc |
10335617 |
T |
|
| Q |
318 |
gcaagtcatgagttttcgctgagatccataaatgagttcatcatgcacacgttggaggaagaagtcaaagggaagctaattccattaatggattcactat |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10335618 |
gcaagtcatgagttttcgctgagatccataaatgagttcatcatgcacacgttggaggaagaagtcaaagggaagctaattccattaatggattcactat |
10335717 |
T |
|
| Q |
418 |
caatagagaacaaagtagttgactttcaagagttgttgggaagattctctttcaatgtggtttgcaaattcacattggggattgatgatgatgatg |
513 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10335718 |
caatagagaacaaagtagttgactttcaagagttgttggggagattctctttcaatgtggtttgcaaattcacattggggattgatgatgatgatg |
10335813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University