View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16712_low_10 (Length: 268)
Name: NF16712_low_10
Description: NF16712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16712_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 35 - 253
Target Start/End: Complemental strand, 27525869 - 27525651
Alignment:
| Q |
35 |
taacaaacatttaagtacccatgatgcaaaagttttggcatcttgaaactcatgacctagtgaaccaggcatttgtttgctacatgtaaaatacctgtga |
134 |
Q |
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| T |
27525869 |
taacaaacatttaagtacccatgatgcaaaagttttggcatcttgaaactcatgacctagtgaaccaggcatttttttgctacatgtaaaatacctgtga |
27525770 |
T |
|
| Q |
135 |
aaggtcagtataaagattagttagaaagtaatgaataataaataaaatacaaggggataatttttgtttatgcaccctgcatctgaataaattccaagct |
234 |
Q |
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| T |
27525769 |
aaggtcagtataaagattagttagaaagtaatgaataataaataaaatacaaggggataatttttgtttatgcaccctgcatctgaataaattccaagct |
27525670 |
T |
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| Q |
235 |
taagacccttgctatgaac |
253 |
Q |
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||||||||||||||||||| |
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| T |
27525669 |
taagacccttgctatgaac |
27525651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 47 - 253
Target Start/End: Complemental strand, 27531415 - 27531208
Alignment:
| Q |
47 |
aagtacccatgatgcaaaagttttggcatcttgaaactcatgacctagtgaaccaggcatttgtttgctacatgtaaaatacctgtgaaaggtcagtata |
146 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
27531415 |
aagtacccatgatgcaaaagttttggcatcttggaactcatgacctagtgaaccaggcatttgtttgctacatgtaaaatacctgtgaaaggtcagaata |
27531316 |
T |
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| Q |
147 |
aagattagttagaaagtaatgaataataaataaaatacaaggggataattt-ttgtttatgcaccctgcatctgaataaattccaagcttaagacccttg |
245 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
27531315 |
aagattagttagaaagtaatgaaaaataaataaaatacaaggggataatttcttgtttatgtaccctgcatctgaataaattccaagcttaagacccttg |
27531216 |
T |
|
| Q |
246 |
ctatgaac |
253 |
Q |
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|||||||| |
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| T |
27531215 |
ctatgaac |
27531208 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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