View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16712_low_12 (Length: 250)
Name: NF16712_low_12
Description: NF16712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16712_low_12 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 97; Significance: 9e-48; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 128 - 250
Target Start/End: Complemental strand, 32364120 - 32364005
Alignment:
| Q |
128 |
agtgttaattctcataaacatatgagctaccgatccttgcttctacttaaatcacttttgatccctaaaattacgttcaacaattgctatccaaacatct |
227 |
Q |
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| T |
32364120 |
agtgttaattctcataaacatatgagctaccgatccttgcttctacttaaatcacttttgat-------attacgttcaacaattgctatccaaacatct |
32364028 |
T |
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| Q |
228 |
aataaattgttttgaagtttcat |
250 |
Q |
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| T |
32364027 |
aataaattgttttgaagtttcat |
32364005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 117
Target Start/End: Complemental strand, 37109513 - 37109441
Alignment:
| Q |
45 |
gttcaaattccaacacttcacttattcacctttaaaatgtgaaattcaaatcattgaaccacttgaccaaaaa |
117 |
Q |
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| T |
37109513 |
gttcaaactccaacactccacttattaacctttaaaatatgaatttccaatcatcgacttacttgaccaaaaa |
37109441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 76
Target Start/End: Complemental strand, 749660 - 749598
Alignment:
| Q |
14 |
gaacaatgcattataatatgtaggggttgaggttcaaattccaacacttcacttattcacctt |
76 |
Q |
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| T |
749660 |
gaacaatgcattattatatgtaggggttggggttcgaaccccgacaccccacttattcacctt |
749598 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 87
Target Start/End: Original strand, 40818470 - 40818501
Alignment:
| Q |
56 |
aacacttcacttattcacctttaaaatgtgaa |
87 |
Q |
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| T |
40818470 |
aacacttcacttattcacctttaaaatgtgaa |
40818501 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 56
Target Start/End: Complemental strand, 36633693 - 36633652
Alignment:
| Q |
15 |
aacaatgcattataatatgtaggggttgaggttcaaattcca |
56 |
Q |
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| T |
36633693 |
aacaatgcattgttatatgtaggggttgaggttcaaactcca |
36633652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 48
Target Start/End: Original strand, 22426424 - 22426456
Alignment:
| Q |
16 |
acaatgcattataatatgtaggggttgaggttc |
48 |
Q |
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| T |
22426424 |
acaatgcattattatatgtaggggttgaggttc |
22426456 |
T |
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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 1513513 - 1513582
Alignment:
| Q |
19 |
atgcattataatatgtaggggttgaggttcaaattcc-aacacttcacttattcacctttaaaatgtgaa |
87 |
Q |
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| T |
1513513 |
atgcattgttatatgtaggggttgaggttcgaacaccgaacaccccacttattcaccttgaaaatgtgaa |
1513582 |
T |
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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 76
Target Start/End: Original strand, 22538562 - 22538623
Alignment:
| Q |
16 |
acaatgcattataatatgtaggggttgaggttcaaattcc-aacacttcacttattcacctt |
76 |
Q |
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| T |
22538562 |
acaatgcattattatatgcaggggttggggttcgaatcccgaacacctcacttattcacctt |
22538623 |
T |
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