View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16712_low_16 (Length: 235)
Name: NF16712_low_16
Description: NF16712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16712_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 24572799 - 24573019
Alignment:
| Q |
1 |
acagtgccccaaagtttttaagaaattacgtcgaaaagcataaatatagcagatgtatgaatggcaaagagaatataatatattcgtagaagtgcagaag |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |
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| T |
24572799 |
acagtgccccaaagtttttaagaaattacgtcgaaaagcataaatatagcagatgtatgaatggcaaagagaatataatatattcgtagaaatgcataag |
24572898 |
T |
|
| Q |
101 |
aggggtgggtgggtgagaatgtgaaaattgaattatgaagctaccattgcccccactaaaagaaaaatatacaaataattataaactacttttgcccaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24572899 |
aggggtgggtgggtgagaatgtgaaaattgaattatgaagctaccattgcccccactaaaagaaaaatatacaaataattataaactacttttgcccaaa |
24572998 |
T |
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| Q |
201 |
agtaattgcatgtgagaagaa |
221 |
Q |
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||||||||||||||||||||| |
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| T |
24572999 |
agtaattgcatgtgagaagaa |
24573019 |
T |
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