View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16712_low_3 (Length: 470)
Name: NF16712_low_3
Description: NF16712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16712_low_3 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 458; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 1 - 470
Target Start/End: Complemental strand, 51912180 - 51911711
Alignment:
| Q |
1 |
aggattaaaacatgactttgtacaacagcaacatggatttacctttggacaagttgggcaagagcaagtgcaggtgcatttgcaactgcataaagaaggg |
100 |
Q |
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| T |
51912180 |
aggattaaaacatgactttgtacaacagcaacatggatttacctttggacaagttgggcaagagcaagtgcaggtgcatttgcaactgcataaagaaggg |
51912081 |
T |
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| Q |
101 |
catgatggacacccaaaattgcaactagttggaaaagtacaacaatttcccgaaccaaggctttgtttacagcaatttgatttgggacaagagaaacaac |
200 |
Q |
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| T |
51912080 |
catgatggacacccaaaattgcaactagttggaaaagtacaacaatttcccgaaccaaggctttgtttacagcaatttgatttgggacaagagaaacaac |
51911981 |
T |
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| Q |
201 |
agcaacagttccacttaggtaaggaacaagtgaaggatggaaaacagttgctgcaactgcaacaactgcatggtttacagtcactgcagcagcttggtaa |
300 |
Q |
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| T |
51911980 |
agcaacagttccacttaggtaaggaacaagtgaaggatggaaaacagttgctgcaactgcaacaactgcatggtttacagtcactgcagcagcttggtaa |
51911881 |
T |
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| Q |
301 |
ttttagatgtacagataatccatcacagcagcagcagcaacagcagatccaagacagattaaaacatggcaaacgactgcacataaaagttagttactca |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51911880 |
ttttagatgtacagataatccatcacagcagcagcagcagcagcagatccaagacagattaaaacatggcaaacgactgcacataaaagttagttactca |
51911781 |
T |
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| Q |
401 |
tgttattcgttatagctattaaataacacttactagtaactaacttgtatcatacaagttcctgcctcaa |
470 |
Q |
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| T |
51911780 |
tgttattcgttatagctattaaataacacttactagttactaactagtatcatacaagttcctgcctcaa |
51911711 |
T |
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