View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16712_low_4 (Length: 420)
Name: NF16712_low_4
Description: NF16712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16712_low_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 390; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 1 - 406
Target Start/End: Original strand, 6429835 - 6430240
Alignment:
| Q |
1 |
tttcttgaatgcagagaataattttgatatatttcaaagctgtgaataggatacaagaactaatttgtttaaatagactcttctatacctaatgggcctg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
6429835 |
tttcttgaatgcagagaataattttgatatatttcaaagctgtgaataggatacaagaactaatttttttaaatagactcttctatacctaatgggcctg |
6429934 |
T |
|
| Q |
101 |
agatttgaactctttccctcgaggttatgaagttaagctctttacaactgagctgattaatgagccggatacaattgtttacaactccccctcaagctgg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6429935 |
agatttgaactctttccctcgaggttatgaagttaagctctttacaactaagctgattaatgagccggatacaattgtttacaactccccctcaagctgg |
6430034 |
T |
|
| Q |
201 |
tgtatgaatatctatcattccctgcttgcaagtaagttggtcgaatcgttttgatggcagtccctttgccaacacatctgctaattgatgccaaaaaaga |
300 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6430035 |
tgaatgaatatctatcattccctgcttgcaagtaagttggttgaatcgttttgatggcagtccctttgccaacacatctgctaattgatgccaaaaaaga |
6430134 |
T |
|
| Q |
301 |
atgtatgttgtagttatcaaaccactgtccaacttttctttaatgaagtgccgatcaattttcgcataggaaagcacagtagatggaaatagatcttcta |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6430135 |
atgtatgttgtagttatcaaaccactgtccaacttttctttaatgaagtgccgatcaattttcgcataggaaagcacagtagatggaaatagatcttcta |
6430234 |
T |
|
| Q |
401 |
tccctc |
406 |
Q |
| |
|
|||||| |
|
|
| T |
6430235 |
tccctc |
6430240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 26 - 97
Target Start/End: Original strand, 6360773 - 6360844
Alignment:
| Q |
26 |
gatatatttcaaagctgtgaataggatacaagaactaatttgtttaaatagactcttctatacctaatgggc |
97 |
Q |
| |
|
|||||||||||| | |||||||||| ||||||||||||||||||||||||| |||||||| | ||||||||| |
|
|
| T |
6360773 |
gatatatttcaacgttgtgaatagggtacaagaactaatttgtttaaataggctcttctaaagctaatgggc |
6360844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 2415168 - 2415124
Alignment:
| Q |
184 |
actccccctcaagctggtgtatgaatatctatcattccctgcttg |
228 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||||||||| ||||| |
|
|
| T |
2415168 |
actccccctcaagctggtgaatgaatatcaatcattcccagcttg |
2415124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 190 - 228
Target Start/End: Original strand, 27203577 - 27203615
Alignment:
| Q |
190 |
cctcaagctggtgtatgaatatctatcattccctgcttg |
228 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
27203577 |
cctcaagctggtgaatgaatatctatcattcccagcttg |
27203615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 95
Target Start/End: Original strand, 52673122 - 52673158
Alignment:
| Q |
59 |
actaatttgtttaaatagactcttctatacctaatgg |
95 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
52673122 |
actaatttgtttaaatagactattctaaacctaatgg |
52673158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 23 - 101
Target Start/End: Complemental strand, 36906900 - 36906822
Alignment:
| Q |
23 |
tttgatatatttcaaagctgtgaataggatacaagaactaatttgtttaaatagactcttctatacctaatgggcctga |
101 |
Q |
| |
|
||||||||||||||||| ||| ||||| |||| | ||||| ||||||||||||||||||| ||||||||||||||| |
|
|
| T |
36906900 |
tttgatatatttcaaagttgttaatagagaacaaccattaattagtttaaatagactcttctaaacctaatgggcctga |
36906822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 50061293 - 50061249
Alignment:
| Q |
184 |
actccccctcaagctggtgtatgaatatctatcattccctgcttg |
228 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
50061293 |
actccccctcaagctggtgaatgaatatctatcattcccagcttg |
50061249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 184 - 279
Target Start/End: Complemental strand, 4464864 - 4464769
Alignment:
| Q |
184 |
actccccctcaagctggtgtatgaatatctatcattccctgcttgcaagtaagttggtcgaatcgttttgatggcagtccctttgccaacacatct |
279 |
Q |
| |
|
|||||| |||||||||||| || ||||||||||||| |||||||||||||||||| ||||| ||||| ||| | ||||||| ||||||||| |
|
|
| T |
4464864 |
actccctctcaagctggtgaatagatatctatcattctaagcttgcaagtaagttggttgaatctttttgttggtaaaccctttgttaacacatct |
4464769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University