View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16712_low_5 (Length: 386)
Name: NF16712_low_5
Description: NF16712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16712_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 18 - 369
Target Start/End: Complemental strand, 43625708 - 43625375
Alignment:
| Q |
18 |
agaacaattgaatctatacgttggtacaaaacattctctacaaaatattaatgtttttccttctaaaagctaaatgctacagggcatacataccttagat |
117 |
Q |
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| T |
43625708 |
agaacaattgaatctatacgttggtacaaaacattctctacaaaatattcatgtttttccttctaaaagctaaatgctacagggcatacataccttagat |
43625609 |
T |
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| Q |
118 |
ggttgctgctgtccttttcttgtatcctgcaaggaccaaaaacaacatttcattaatttccacactttttcatatcatagctggtaacaaattcctcact |
217 |
Q |
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| T |
43625608 |
ggttgctgctgtccttttcttgaatcctgcaaggaccaaaaacaacatttcattaatttccacactttctcatatcatagctggtaacaaattcatcact |
43625509 |
T |
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| Q |
218 |
gaagaaatgagaaaacaaacaaagcaaattgagaactatgaaagcgaattcggtttcaaaggcgaatataattccaaatacacaaaggtggcaattcaat |
317 |
Q |
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| T |
43625508 |
gaagaaatgagaaaacaaacaaagcaaattgagaactatgaaagcgaattcgg------------------ttccaaatacacaaaggtggcaattcaat |
43625427 |
T |
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| Q |
318 |
tctcaaccaaagttgcataaacaataaacaaattaacaaaaataaaagaact |
369 |
Q |
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| T |
43625426 |
tctcaaccaaagttgcataaacaataaacaaattaacaaaaataaaagaact |
43625375 |
T |
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