View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16712_low_6 (Length: 358)
Name: NF16712_low_6
Description: NF16712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16712_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 11 - 343
Target Start/End: Original strand, 37195677 - 37196017
Alignment:
| Q |
11 |
gaagaatatcctgttgatatttgaggttgtgaggttgctcccatttcaagaagtcttctcgagtatctcaagcttcgacggggattcggatttaattgtc |
110 |
Q |
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| T |
37195677 |
gaagaatatcctgttgatattttaggttgtgaggttgctcccatttcaagaagtcttctcgagtatctcaagcttcgacggggattcggatttaattgcc |
37195776 |
T |
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| Q |
111 |
ttctcgggccttcccaagacccagactgaacatatacacaaagcaacaagttgaaagttaggatcacaccaacaagac--------agagagagnnnnnn |
202 |
Q |
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| T |
37195777 |
ttctcgggccttcccaagactcggactgaacatatacacaaagcaacaagttgaaagttaggatcaaaccaacaagacataaatagagaaaaaaaaaaaa |
37195876 |
T |
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| Q |
203 |
nnntagaaaaccccaagaaacatctcattttacat-ctctttgtatattacannnnnnnnnggcaccgaggaggattgaacttgagacatcgataggagt |
301 |
Q |
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| T |
37195877 |
aaatagaaaaccccaagaaacatctcattttacatcctctttgtatattaca-ttttttttggcaccgaggaggattgaacctgagacatcgataggagt |
37195975 |
T |
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| Q |
302 |
cccaagccaacatgatgatgccaacccaagtgggttcctctt |
343 |
Q |
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| T |
37195976 |
cccaagccaacatgacgatgccaacccaagtgggttcctctt |
37196017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 122 - 189
Target Start/End: Original strand, 37203624 - 37203691
Alignment:
| Q |
122 |
tcccaagacccagactgaacatatacacaaagcaacaagttgaaagttaggatcacaccaacaagaca |
189 |
Q |
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| T |
37203624 |
tcccaagactcagactgaacatatacacaaggcaagaagttaaaaattactattaaaccaacaagaca |
37203691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 134 - 174
Target Start/End: Complemental strand, 413220 - 413180
Alignment:
| Q |
134 |
gactgaacatatacacaaagcaacaagttgaaagttaggat |
174 |
Q |
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| T |
413220 |
gactgaatatatagacaaggcaacaagttgaaagttaggat |
413180 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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