View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16712_low_7 (Length: 349)

Name: NF16712_low_7
Description: NF16712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16712_low_7
NF16712_low_7
[»] chr7 (4 HSPs)
chr7 (1-333)||(354350-354682)
chr7 (1-304)||(10580733-10581030)
chr7 (10-201)||(10575342-10575532)
chr7 (126-198)||(39954885-39954957)
[»] chr3 (7 HSPs)
chr3 (9-202)||(21584633-21584825)
chr3 (28-198)||(25085011-25085180)
chr3 (28-198)||(24923500-24923669)
chr3 (28-198)||(24497299-24497468)
chr3 (28-198)||(31825597-31825766)
chr3 (28-195)||(24919929-24920095)
chr3 (28-198)||(24982019-24982188)
[»] chr8 (1 HSPs)
chr8 (10-202)||(14261068-14261259)
[»] chr2 (1 HSPs)
chr2 (9-202)||(41027526-41027718)
[»] chr4 (2 HSPs)
chr4 (10-202)||(22898508-22898699)
chr4 (10-202)||(22950176-22950367)


Alignment Details
Target: chr7 (Bit Score: 325; Significance: 0; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 354350 - 354682
Alignment:
Q  1 ctttgcggtaacattcaaggaataacaaagccagcgattcgtagattggcgagaagaggtggtgtgaagaggatcagtggttttaatctatgaggaaata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  354350 ctttgcggtaacattcaaggaataacaaagccagcgattcgtagattggcgagaagaggtggtgtgaagaggatcagtggttttaatctatgaggaaata 354449  T
Q  101 agaggagtgttgaagattttcttgcagaatgagatttgtgatgctgttacttacactgagcgtgcaaggaggaagactctgactgctatggatgttgttt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  354450 agaggagtgttgaagattttcttgcagaatgagatttgtgatgctgttacttacactgagcatgcaaggaggaagactctgactgctatggatgttgttt 354549  T
Q  201 atcagggaagaaccctctacagttttggtggatgaagaagatgaagatttgttatgttgtttctttgtatttgtagcatgtgagtgttccgtacaattgt 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  354550 atcagggaagaaccctctacagttttggtggatgaagaagatgaagatttgttatgttgtttctttgtatttgtagcatgtgagtgttccatacaattgt 354649  T
Q  301 tatcattgtaatctaatgaaatgatctttcatg 333  Q
    |||||||||||||||||||||||||||||||||    
T  354650 tatcattgtaatctaatgaaatgatctttcatg 354682  T

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Target: chr7; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 10580733 - 10581030
Alignment:
Q  1 ctttgcggtaacattcaaggaataacaaagccagcgattcgtagattggcgagaagaggtggtgtgaagaggatcagtggttttaatctatgaggaaata 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||    
T  10580733 ctttgcggtaacattcaaggaataacaaagccagcgattcgtagattggcgagaagagttggtgtgaagaggatcagtgg-tttgatctatgaggaaata 10580831  T
Q  101 agaggagtgttgaagattttcttgcagaatgagatttgtgatgctgttacttacactgagcgtgcaaggaggaagactctgactgctatggatgttgttt 200  Q
    |||||| ||||||||||||||||||||||| |||||  |||||||||||||||||||||||     | ||||||||||||||||||||||||||||||||    
T  10580832 agaggactgttgaagattttcttgcagaataagattcttgatgctgttacttacactgagc-----atgaggaagactctgactgctatggatgttgttt 10580926  T
Q  201 atcagggaagaaccctctacagttttggtggatgaagaagatgaagatttgttatgttgtttctttgtatttgtagcatgtgagtgttccgtacaattgt 300  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||||||||| | ||||||| |||||||| | ||||||||||||||||| ||||||    
T  10580927 atcagggaagaaccctctatggttttggtggatgaagaagatgaagatttgttaagctgtttctgtgtatttgaaacatgtgagtgttccgtataattgt 10581026  T

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Target: chr7; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 10 - 201
Target Start/End: Original strand, 10575342 - 10575532
Alignment:
Q  10 aacattcaaggaataacaaagccagcgattcgtagattggcgagaagaggtggtgtgaagaggatcagtggttttaatctatgaggaaataagaggagtg 109  Q
    ||||| |||||||| |||||||||||||||||| |||||||||||||||| |||||||| || ||||||||  || ||||||||||||| |||||| |||    
T  10575342 aacatccaaggaatcacaaagccagcgattcgtcgattggcgagaagaggaggtgtgaaaagaatcagtgg-attgatctatgaggaaacaagaggtgtg 10575440  T
Q  110 ttgaagattttcttgcagaatgagatttgtgatgctgttacttacactgagcgtgcaaggaggaagactctgactgctatggatgttgttta 201  Q
    |||||||| |||||| ||||||  ||  | |||||||||||||||||||||| ||| |||||||| ||| ||||||||||||||||||||||    
T  10575441 ttgaagatcttcttggagaatgttataagagatgctgttacttacactgagcatgcgaggaggaaaactgtgactgctatggatgttgttta 10575532  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 126 - 198
Target Start/End: Complemental strand, 39954957 - 39954885
Alignment:
Q  126 agaatgagatttgtgatgctgttacttacactgagcgtgcaaggaggaagactctgactgctatggatgttgt 198  Q
    |||||| |||| |||||||||||||||||||||||| ||| |||||||| ||| | || || |||||||||||    
T  39954957 agaatgtgattcgtgatgctgttacttacactgagcatgctaggaggaaaactgttaccgccatggatgttgt 39954885  T

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Target: chr3 (Bit Score: 110; Significance: 2e-55; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 9 - 202
Target Start/End: Complemental strand, 21584825 - 21584633
Alignment:
Q  9 taacattcaaggaataacaaagccagcgattcgtagattggcgagaagaggtggtgtgaagaggatcagtggttttaatctatgaggaaataagaggagt 108  Q
    ||||||||| ||||| || ||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||| | | |||||||||| |||||||||    
T  21584825 taacattcagggaatcaccaagccagcgattcgtcgattggcgagaagaggtggtgttaagagaatcagtggtttgatt-tatgaggaaacaagaggagt 21584727  T
Q  109 gttgaagattttcttgcagaatgagatttgtgatgctgttacttacactgagcgtgcaaggaggaagactctgactgctatggatgttgtttat 202  Q
      | |||||||||||| |||||| |||| ||||||| ||||| |||||||||| |||||||||||||||| |||||||||||||||||||||||    
T  21584726 tcttaagattttcttggagaatgtgattcgtgatgcggttacgtacactgagcatgcaaggaggaagactgtgactgctatggatgttgtttat 21584633  T

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Target: chr3; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 28 - 198
Target Start/End: Original strand, 25085011 - 25085180
Alignment:
Q  28 aagccagcgattcgtagattggcgagaagaggtggtgtgaagaggatcagtggttttaatctatgaggaaataagaggagtgttgaagattttcttgcag 127  Q
    ||||| || ||||||||||||||||||||||||||||||||||| |||||||| ||| || ||||| ||||  ||||| || |||||||| |||||| ||    
T  25085011 aagcctgccattcgtagattggcgagaagaggtggtgtgaagagaatcagtgg-tttgatatatgaagaaaccagaggtgtcttgaagatcttcttggag 25085109  T
Q  128 aatgagatttgtgatgctgttacttacactgagcgtgcaaggaggaagactctgactgctatggatgttgt 198  Q
    |||| |||  ||||||| ||||| ||||||||||  ||||||||||||||| |||| || |||||||||||    
T  25085110 aatgtgatccgtgatgcagttacatacactgagcacgcaaggaggaagactgtgacagccatggatgttgt 25085180  T

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Target: chr3; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 28 - 198
Target Start/End: Complemental strand, 24923669 - 24923500
Alignment:
Q  28 aagccagcgattcgtagattggcgagaagaggtggtgtgaagaggatcagtggttttaatctatgaggaaataagaggagtgttgaagattttcttgcag 127  Q
    ||||| || |||||| ||||||| |||||||||||||| ||||| ||||||||||| | ||||||| ||||  ||||| || |||||||| |||||| ||    
T  24923669 aagcctgctattcgtcgattggcaagaagaggtggtgttaagagaatcagtggtttga-tctatgaagaaaccagaggtgtcttgaagatcttcttggag 24923571  T
Q  128 aatgagatttgtgatgctgttacttacactgagcgtgcaaggaggaagactctgactgctatggatgttgt 198  Q
    ||||  ||| |||||||||| || ||||||||||  ||||||||||||||  |||| || |||||||||||    
T  24923570 aatgtcattcgtgatgctgtgacatacactgagcacgcaaggaggaagacagtgacagccatggatgttgt 24923500  T

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Target: chr3; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 28 - 198
Target Start/End: Complemental strand, 24497468 - 24497299
Alignment:
Q  28 aagccagcgattcgtagattggcgagaagaggtggtgtgaagaggatcagtggttttaatctatgaggaaataagaggagtgttgaagattttcttgcag 127  Q
    ||||| || |||||| ||||||| |||||||||||||| ||||| |||||||| || | ||||||| ||||  ||||| || |||||||| |||||| |     
T  24497468 aagcctgctattcgtcgattggcaagaagaggtggtgttaagagaatcagtggattga-tctatgaagaaaccagaggtgtcttgaagatcttcttggaa 24497370  T
Q  128 aatgagatttgtgatgctgttacttacactgagcgtgcaaggaggaagactctgactgctatggatgttgt 198  Q
    |||| |||  ||||||| ||||| ||||||||||  ||||||||||||||| |||| || |||||||||||    
T  24497369 aatgtgatccgtgatgcagttacatacactgagcacgcaaggaggaagactgtgacagccatggatgttgt 24497299  T

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Target: chr3; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 28 - 198
Target Start/End: Complemental strand, 31825766 - 31825597
Alignment:
Q  28 aagccagcgattcgtagattggcgagaagaggtggtgtgaagaggatcagtggttttaatctatgaggaaataagaggagtgttgaagattttcttgcag 127  Q
    ||||| || |||||| ||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||  ||||| || |||||||| |||||| ||    
T  31825766 aagcctgccattcgtcgattggcgagaagaggtggtgtgaagaggatcagtgg-tttgatctatgaagaaactagaggtgtcttgaagatcttcttggag 31825668  T
Q  128 aatgagatttgtgatgctgttacttacactgagcgtgcaaggaggaagactctgactgctatggatgttgt 198  Q
    ||||  ||  ||||||| || || ||||||||||  || |||||||||||  | || || |||||||||||    
T  31825667 aatgtcatccgtgatgcggtcacatacactgagcacgctaggaggaagacagttaccgcgatggatgttgt 31825597  T

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Target: chr3; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 28 - 195
Target Start/End: Complemental strand, 24920095 - 24919929
Alignment:
Q  28 aagccagcgattcgtagattggcgagaagaggtggtgtgaagaggatcagtggttttaatctatgaggaaataagaggagtgttgaagattttcttgcag 127  Q
    ||||| || |||||| ||||||| |||||||||||||||||||| ||||| || ||| |||||||| ||||  ||||| || |||||||| |||||  ||    
T  24920095 aagcctgcaattcgtcgattggcaagaagaggtggtgtgaagagaatcagcgg-tttgatctatgaagaaaccagaggtgtcttgaagatcttcttagag 24919997  T
Q  128 aatgagatttgtgatgctgttacttacactgagcgtgcaaggaggaagactctgactgctatggatgt 195  Q
    ||||  ||| |||||||||| || ||||||||||  || |||||||||||  |||| || ||||||||    
T  24919996 aatgtcattcgtgatgctgtgacatacactgagcacgctaggaggaagacagtgacagccatggatgt 24919929  T

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Target: chr3; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 28 - 198
Target Start/End: Original strand, 24982019 - 24982188
Alignment:
Q  28 aagccagcgattcgtagattggcgagaagaggtggtgtgaagaggatcagtggttttaatctatgaggaaataagaggagtgttgaagattttcttgcag 127  Q
    ||||| || |||||| ||||||| |||||||||||||| ||||| |||||||| ||| || ||||| ||||  ||||| || |||||||| |||||| ||    
T  24982019 aagcctgctattcgtcgattggcaagaagaggtggtgttaagagaatcagtgg-tttgatatatgaagaaaccagaggtgtcttgaagatcttcttggag 24982117  T
Q  128 aatgagatttgtgatgctgttacttacactgagcgtgcaaggaggaagactctgactgctatggatgttgt 198  Q
    ||||  ||  ||||||| ||||| ||||||||||  || |||||||||||| | || || |||||||||||    
T  24982118 aatgtcatccgtgatgcagttacatacactgagcacgctaggaggaagactgttaccgccatggatgttgt 24982188  T

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Target: chr8 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 10 - 202
Target Start/End: Complemental strand, 14261259 - 14261068
Alignment:
Q  10 aacattcaaggaataacaaagccagcgattcgtagattggcgagaagaggtggtgtgaagaggatcagtggttttaatctatgaggaaataagaggagtg 109  Q
    ||||| |||||||| |||||||||||||||||  |||| ||||||||||| ||||||||||| ||||| || || | | ||||| ||||   | || |||    
T  14261259 aacatccaaggaatcacaaagccagcgattcggcgattagcgagaagaggaggtgtgaagagaatcagcgggttgatt-tatgaagaaactcgcggtgtg 14261161  T
Q  110 ttgaagattttcttgcagaatgagatttgtgatgctgttacttacactgagcgtgcaaggaggaagactctgactgctatggatgttgtttat 202  Q
    ||||||||||||||| |||||| |||  | ||||||||||| || ||||| | ||| |||||||||||  | |||||||||||||||||||||    
T  14261160 ttgaagattttcttggagaatgtgataagagatgctgttacgtatactgaacatgcgaggaggaagacggttactgctatggatgttgtttat 14261068  T

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Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 9 - 202
Target Start/End: Original strand, 41027526 - 41027718
Alignment:
Q  9 taacattcaaggaataacaaagccagcgattcgtagattggcgagaagaggtggtgtgaagaggatcagtggttttaatctatgaggaaataagaggagt 108  Q
    ||||||||||||||| || ||||| ||||||||| | |||||  | ||||| || |||||| | || || ||||| | |||| || || | | | || ||    
T  41027526 taacattcaaggaattacgaagcctgcgattcgtcgtttggcacgtagaggaggagtgaagcgtataagcggtttga-tctacgaagagacacgtggcgt 41027624  T
Q  109 gttgaagattttcttgcagaatgagatttgtgatgctgttacttacactgagcgtgcaaggaggaagactctgactgctatggatgttgtttat 202  Q
    ||||||||| || ||| ||||||  ||| ||||||||||||||||||| ||||  || ||||| |||||| | |||||||||||||||||||||    
T  41027625 gttgaagatctttttggagaatgttattcgtgatgctgttacttacacagagcacgctaggagaaagactgttactgctatggatgttgtttat 41027718  T

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Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 10 - 202
Target Start/End: Original strand, 22898508 - 22898699
Alignment:
Q  10 aacattcaaggaataacaaagccagcgattcgtagattggcgagaagaggtggtgtgaagaggatcagtggttttaatctatgaggaaataagaggagtg 109  Q
    ||||| || |||||||||||||||||||||||| |  | ||  | ||||| || |||||| | ||||||||||| | | |||||||| | | | || |||    
T  22898508 aacatccagggaataacaaagccagcgattcgtcgtcttgctcgtagaggaggagtgaagcgtatcagtggtttgatt-tatgaggagacacgtggcgtg 22898606  T
Q  110 ttgaagattttcttgcagaatgagatttgtgatgctgttacttacactgagcgtgcaaggaggaagactctgactgctatggatgttgtttat 202  Q
    |||||||| || ||| |||||| |||| | |||||||| |||||||||||||  || || ||||||||  | |||||||||||||| ||||||    
T  22898607 ttgaagatatttttggagaatgtgattagagatgctgtgacttacactgagcacgctagaaggaagacggttactgctatggatgtggtttat 22898699  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 10 - 202
Target Start/End: Original strand, 22950176 - 22950367
Alignment:
Q  10 aacattcaaggaataacaaagccagcgattcgtagattggcgagaagaggtggtgtgaagaggatcagtggttttaatctatgaggaaataagaggagtg 109  Q
    ||||| || |||||||||||||||||||||||| |  | ||  | ||||| || |||||| | ||||||||||| | | |||||||| | | | || |||    
T  22950176 aacatccagggaataacaaagccagcgattcgtcgtcttgctcgtagaggaggagtgaagcgtatcagtggtttgatt-tatgaggagacacgtggcgtg 22950274  T
Q  110 ttgaagattttcttgcagaatgagatttgtgatgctgttacttacactgagcgtgcaaggaggaagactctgactgctatggatgttgtttat 202  Q
    |||||||| || ||| |||||| |||| | |||||||| |||||||||||||  || || ||||||||  | |||||||||||||| ||||||    
T  22950275 ttgaagatatttttggagaatgtgattagagatgctgtgacttacactgagcacgctagaaggaagacggttactgctatggatgtggtttat 22950367  T

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