View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16712_low_9 (Length: 311)
Name: NF16712_low_9
Description: NF16712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16712_low_9 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 18 - 293
Target Start/End: Complemental strand, 51911416 - 51911140
Alignment:
| Q |
18 |
acacagatatcaataattgaaaaattcctacccacataatttagaattcttgttgaagtgtaaaatttgtttataaggtgtcagtttagtgttaagagtt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
51911416 |
acacagatatcaataattgaaaaattcctacccacataatttagaattcttgttgaagtgtaaaatttgtttatgaggtgtcagtttagtgttaagagtt |
51911317 |
T |
|
| Q |
118 |
taattttgtaccctcgagggacaaagttcaaatccccttaaagacaattgtaaaatattcattaatgtcactcgaattaataataattttcgctttccca |
217 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51911316 |
taattttgtaccctcga-ggacaaagttcaaatccccttaaagacaattgtaaaatattcattaatgtcactcgaattaataataattttcgctttccca |
51911218 |
T |
|
| Q |
218 |
--atannnnnnnngaaagagcacaatttaacaatttccaatagtcttgctactcaaaactttcttagtataagcaaat |
293 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
51911217 |
atatattttttttgaaagagcacaatttaacaatttccaatagtcttactactcaaaactttcttagtataagcaaat |
51911140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 126
Target Start/End: Original strand, 42039639 - 42039676
Alignment:
| Q |
89 |
tataaggtgtcagtttagtgttaagagtttaattttgt |
126 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |||| |
|
|
| T |
42039639 |
tataaggtgtcagtttagtgttaagattttaatcttgt |
42039676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 208
Target Start/End: Complemental strand, 33129861 - 33129817
Alignment:
| Q |
164 |
attgtaaaatattcattaatgtcactcgaattaataataattttc |
208 |
Q |
| |
|
||||||||||| |||||||| ||||| ||||||||||||||||| |
|
|
| T |
33129861 |
attgtaaaataatcattaatttcactgtaattaataataattttc |
33129817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University