View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16713_high_2 (Length: 418)

Name: NF16713_high_2
Description: NF16713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16713_high_2
NF16713_high_2
[»] chr1 (12 HSPs)
chr1 (18-360)||(12988105-12988448)
chr1 (20-285)||(12994468-12994734)
chr1 (19-143)||(12940518-12940643)
chr1 (18-143)||(12954276-12954402)
chr1 (19-143)||(12916744-12916869)
chr1 (18-143)||(12948696-12948822)
chr1 (358-401)||(12988008-12988051)
chr1 (16-130)||(12978122-12978236)
chr1 (16-130)||(19756225-19756339)
chr1 (219-285)||(12954107-12954173)
chr1 (221-264)||(12948577-12948620)
chr1 (224-285)||(12916959-12917020)


Alignment Details
Target: chr1 (Bit Score: 285; Significance: 1e-159; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 18 - 360
Target Start/End: Complemental strand, 12988448 - 12988105
Alignment:
Q  18 actctccacccaaaatattttttgttgaacaccatttgggaattgaaggaatattgggtttgatattcttttccaaaagctctccacatacttcttggga 117  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  12988448 actctccacccaaaatattttttgttgaacaccgtttggaaattgaaggaatattgggtttgatattcttttccaaaatttctccacatacttcttggga 12988349  T
Q  118 atcctctgcaacaagaatttcagaaaaatattaatattttcaaaagcaaacacacataaatgcaacattttgtaaatattgagtgtactaataactaatg 217  Q
    |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  12988348 atcctctgcaacaaaaatttcagaaagatattaatattttcaaaagcaaacacacataaatgcaacattttgtaaatattgagtgtactaataattaatg 12988249  T
Q  218 tatatgcttacaagcttcttatcatgcaatattatcctatgaaaatcggggatattttgaaatgacattatgaatacgaagaagttagaaacaatgcttt 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  12988248 tatatgcttacaagcttcttatcatgcaatattatcctatgaaaatcggggatatttttaaatgacattatgaatacgaagaagttagaaacaatgcttt 12988149  T
Q  318 tgtttattat---gacgaagttagaaacaatatgctagtgtctcta 360  Q
    | ||||||||   ||||||||||||||||  |||||||||||||||    
T  12988148 tttttattattaagacgaagttagaaaca--atgctagtgtctcta 12988105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 20 - 285
Target Start/End: Complemental strand, 12994734 - 12994468
Alignment:
Q  20 tctccacccaaaatattttttgttgaacaccatttgggaattgaaggaatattgggtttgatattcttttccaaaagctctccacatacttcttgggaat 119  Q
    ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||| |  |||||||||| ||||| ||||     
T  12994734 tctccacccaaaatattttttgttgaacaccatttggtaatttaaggaatattgggtttgatattcctttccaatatttctccacatatttctttggaac 12994635  T
Q  120 cctctgcaac-aagaatttcagaaaaatattaatattttcaa----aagcaaacacacataaatgcaacattttgtaaatattgagtgtactaataacta 214  Q
    |||||||||| ||||| |||| |||  |||||| ||||| ||    || || | | | |||||||||||||  | |||||||  | | || | ||  |||    
T  12994634 cctctgcaacaaagaaattcataaagttattaacatttttaaatataaacatatataaataaatgcaacatactctaaatatgcaatttaattatttcta 12994535  T
Q  215 atgtatatgcttacaagcttcttatcatgcaatattatcctatgaaaatcggggatattttgaaatgacat 285  Q
        |||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  12994534 ----atatgcttacaagcttcttatcttgcaatattatcctatgaaaatcggggatatattgaaatgacat 12994468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 19 - 143
Target Start/End: Complemental strand, 12940643 - 12940518
Alignment:
Q  19 ctctccacccaaaatattttttgttgaacaccatttgggaattgaaggaatattgggtttgatattcttttccaaaagctctccacatacttcttgggaa 118  Q
    ||||||||||||||||||| |||||||| ||||||||| |||| ||||||||| ||||||||||||| ||||||| |  |||||||||| ||||| ||||    
T  12940643 ctctccacccaaaatatttcttgttgaataccatttggaaatttaaggaatatagggtttgatattcctttccaatatttctccacatatttctttggaa 12940544  T
Q  119 tcctctgcaac-aagaatttcagaaa 143  Q
     |||||||||| ||||| ||||||||    
T  12940543 ccctctgcaacaaagaaattcagaaa 12940518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 18 - 143
Target Start/End: Complemental strand, 12954402 - 12954276
Alignment:
Q  18 actctccacccaaaatattttttgttgaacaccatttgggaattgaaggaatattgggtttgatattcttttccaaaagctctccacatacttcttggga 117  Q
    ||||||| |||||||||||| |||||||||||||||||| |||| ||||||||| ||||||||||||| ||||||| |  ||||||||||  |||| |||    
T  12954402 actctccgcccaaaatatttcttgttgaacaccatttggaaatttaaggaatatagggtttgatattcctttccaatatttctccacatatatcttagga 12954303  T
Q  118 atcctctgcaac-aagaatttcagaaa 143  Q
    | |||||||||| ||||| ||||||||    
T  12954302 accctctgcaacaaagaaattcagaaa 12954276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 19 - 143
Target Start/End: Original strand, 12916744 - 12916869
Alignment:
Q  19 ctctccacccaaaatattttttgttgaacaccatttgggaattgaaggaatattgggtttgatattcttttccaaaagctctccacatacttcttgggaa 118  Q
    ||||||||||||||||||| |||||||||||||||||| |||| || |||||| ||||||||||||| ||||||| |  |||||||||| ||||| ||||    
T  12916744 ctctccacccaaaatatttcttgttgaacaccatttggaaatttaatgaatatagggtttgatattcctttccaatatttctccacatatttctttggaa 12916843  T
Q  119 tcctctgcaac-aagaatttcagaaa 143  Q
      ||||||||| ||||| ||||||||    
T  12916844 ctctctgcaacaaagaaattcagaaa 12916869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 18 - 143
Target Start/End: Complemental strand, 12948822 - 12948696
Alignment:
Q  18 actctccacccaaaatattttttgttgaacaccatttgggaattgaaggaatattgggtttgatattcttttccaaaagctctccacatacttcttggga 117  Q
    ||||| |||||||||||||||||||| |||||| ||||| |||  ||||||||| ||||||||||||| |||| || |  | |||||||| ||||| |||    
T  12948822 actcttcacccaaaatattttttgttcaacaccgtttggaaatataaggaatatagggtttgatattcctttcaaatatttgtccacatatttctttgga 12948723  T
Q  118 atcctctgcaac-aagaatttcagaaa 143  Q
    | |||||||||| ||||| ||||||||    
T  12948722 accctctgcaacaaagaaattcagaaa 12948696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 358 - 401
Target Start/End: Complemental strand, 12988051 - 12988008
Alignment:
Q  358 ctattgattgactaatgactactaatggtcgttgtgtcttttca 401  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  12988051 ctattgattgactaatgactactaatggtcgttgtgtcttttca 12988008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 16 - 130
Target Start/End: Original strand, 12978122 - 12978236
Alignment:
Q  16 tcactctccacccaaaatattttttgttgaacaccatttgggaattgaaggaatattgggtttgatattcttttccaaaagctctccacatacttcttgg 115  Q
    |||| |||||||||||||||||| | |||| |||||||||||| |  ||| | || ||| |||| ||||||||||||| |  |||||||| | |||||||    
T  12978122 tcacgctccacccaaaatattttcttttgagcaccatttgggagtctaagaattactggatttggtattcttttccaatatttctccacaaatttcttgg 12978221  T
Q  116 gaatcctctgcaaca 130  Q
    ||| |||||||||||    
T  12978222 gaaccctctgcaaca 12978236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 16 - 130
Target Start/End: Complemental strand, 19756339 - 19756225
Alignment:
Q  16 tcactctccacccaaaatattttttgttgaacaccatttgggaattgaaggaatattgggtttgatattcttttccaaaagctctccacatacttcttgg 115  Q
    |||| |||||||||||||||||  | |||| |||||||||||| |  ||| | || ||| |||| ||||||||||||| |  |||||||| | |||||||    
T  19756339 tcacgctccacccaaaatatttccttttgagcaccatttgggagtctaagaattactggatttggtattcttttccaatatttctccacaaatttcttgg 19756240  T
Q  116 gaatcctctgcaaca 130  Q
    ||| |||||||||||    
T  19756239 gaaccctctgcaaca 19756225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 219 - 285
Target Start/End: Complemental strand, 12954173 - 12954107
Alignment:
Q  219 atatgcttacaagcttcttatcatgcaatattatcctatgaaaatcggggatattttgaaatgacat 285  Q
    ||||||||||||| |||||||| ||||| ||||||||||||||||| || | || || |||||||||    
T  12954173 atatgcttacaagtttcttatcttgcaagattatcctatgaaaatccggaacatgttcaaatgacat 12954107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 221 - 264
Target Start/End: Complemental strand, 12948620 - 12948577
Alignment:
Q  221 atgcttacaagcttcttatcatgcaatattatcctatgaaaatc 264  Q
    ||||||||||| |||||||| ||||| |||||||||||||||||    
T  12948620 atgcttacaagtttcttatcttgcaagattatcctatgaaaatc 12948577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 285
Target Start/End: Original strand, 12916959 - 12917020
Alignment:
Q  224 cttacaagcttcttatcatgcaatattatcctatgaaaatcggggatattttgaaatgacat 285  Q
    |||||||| |||||||| ||||||||||| ||||||||||| || |  | ||||||||||||    
T  12916959 cttacaagtttcttatcttgcaatattattctatgaaaatctggaacttgttgaaatgacat 12917020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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