View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16714_high_3 (Length: 813)
Name: NF16714_high_3
Description: NF16714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16714_high_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 422; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 1 - 606
Target Start/End: Complemental strand, 10496840 - 10496246
Alignment:
| Q |
1 |
ttcaccatgcaatttactaccaatggggaatcacattatataaactttgaaggtaaattcaagtattgaattttttaaaaggtcttgaatcaattacgtt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||| |||||||||||||||| |
|
|
| T |
10496840 |
ttcaccatgcaatttactaccaatggggaatcacattatataaactttgaagataaattcaagtattgaatttttgaaatggtattgaatcaattacgtt |
10496741 |
T |
|
| Q |
101 |
aatgttgactaattaacaaaccttacagacagatggcagattagccacctacattgcatataaaaggttaaaagattatgagctataaattcatgattca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
10496740 |
aatgttgactaattaacaaaccttacagacagatggcagattagccacctacattgcatataaaaggttaaaagattataagctataaattcatgattca |
10496641 |
T |
|
| Q |
201 |
atgaagaaattgctaaaagaagatcaaagagaatgacatattatttaaagatgtacgtagctagggtcttatatttctatatgttgagagctaattcgtt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10496640 |
atgaagaaattgctaaaagaagatcaaagagaatgacatattatttaaagatgtacg----tagggtcttatatttctatatgttgagagctaattcgtt |
10496545 |
T |
|
| Q |
301 |
ggattaagacttaagagtatcaatgttgactaattaacaaacacgttacaaatttcttcactagtgagtgagaatcacagtgatggttcattggtttgtt |
400 |
Q |
| |
|
|||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |
|
|
| T |
10496544 |
ggattacgacttaatagtatcaatgttgactaattaacaaacacgttacaaatttcttcactagtgagtgagaatcacagtga--------tggattgtt |
10496453 |
T |
|
| Q |
401 |
taacacttcaacctacttttctttagggaaagtgactggtcaacacaatgaaccaaagattaagaaatgtctaaaataaata---aaccgaaatttttct |
497 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| || |||||||| |
|
|
| T |
10496452 |
taacactttaacctacttctctttagggaaagtgactggtcaacacaatgaaccaaagattaagaaatgtctaaaaaaaataattaactgagatttttct |
10496353 |
T |
|
| Q |
498 |
tgaatcacggttgt--catttgtaaataatttattggatattgctagcaagtatacgccttaggacacttgttaatgatttaaaatgaaaacaaatgata |
595 |
Q |
| |
|
| |||||| ||||| |||||||||||||||||||||| ||| |||||||| | ||||| |||| ||||||||||| |||||||||||| | || || |
|
|
| T |
10496352 |
taaatcaccgttgtaaaatttgtaaataatttattggatcttggtagcaagtgt---cctta-gacatttgttaatgatgtaaaatgaaaactattgtta |
10496257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 577 - 679
Target Start/End: Original strand, 26738481 - 26738584
Alignment:
| Q |
577 |
aaaatgaaaacaaatg-ataatttttatgtaaaagaaaattgatttttaatgtttcaataggttgaacatacaaatctcatgctaaaaattttactttaa |
675 |
Q |
| |
|
||||||||||||| || |||||||| || ||||| ||| ||||||||||||||||||||| |||||| | ||| || ||| | ||||| || |||||||| |
|
|
| T |
26738481 |
aaaatgaaaacaagtggataattttcatataaaaaaaagttgatttttaatgtttcaatatgttgaatacacatatttcaggataaaatttctactttaa |
26738580 |
T |
|
| Q |
676 |
actt |
679 |
Q |
| |
|
|||| |
|
|
| T |
26738581 |
actt |
26738584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 577 - 679
Target Start/End: Original strand, 41291446 - 41291548
Alignment:
| Q |
577 |
aaaatgaaaacaaatgataatttttatgtaaaagaaaattgatttttaatgtttcaataggttgaacatacaaatctcatgctaaaaattttactttaaa |
676 |
Q |
| |
|
||||| |||| || || ||||||| |||||||| |||||| ||||| ||||||||||| |||||| ||||||||||| ||||| || ||||||||| |
|
|
| T |
41291446 |
aaaataaaaataattggtaattttaatgtaaaaaaaaattattttttgatgtttcaatatgttgaatatacaaatctccatataaaatttatactttaaa |
41291545 |
T |
|
| Q |
677 |
ctt |
679 |
Q |
| |
|
||| |
|
|
| T |
41291546 |
ctt |
41291548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 557 - 609
Target Start/End: Complemental strand, 34187067 - 34187014
Alignment:
| Q |
557 |
aggacacttgttaatgattt-aaaatgaaaacaaatgataatttttatgtaaaa |
609 |
Q |
| |
|
|||||||||||||| ||||| |||||| |||||| |||||||||| |||||||| |
|
|
| T |
34187067 |
aggacacttgttaaagatttaaaaatggaaacaattgataattttcatgtaaaa |
34187014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000008; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 560 - 679
Target Start/End: Complemental strand, 11123581 - 11123463
Alignment:
| Q |
560 |
acacttgttaatgatttaaaatgaaaacaaatgataatttttatgtaaaagaaaattgatttttaatgtttcaataggttgaacatacaaatctcatgct |
659 |
Q |
| |
|
|||||| |||| ||||||||||| |||||| | ||||||| |||||| || || |||||||||| |||||| |||| |||||| | |||||| ||| | |
|
|
| T |
11123581 |
acacttattaaagatttaaaatggaaacaattaataatttctatgtagaa-aagattgatttttgatgttttaatatgttgaatacacaaattctatgat |
11123483 |
T |
|
| Q |
660 |
aaaaattttactttaaactt |
679 |
Q |
| |
|
|||| ||| ||||||||||| |
|
|
| T |
11123482 |
aaaattttcactttaaactt |
11123463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 559 - 633
Target Start/End: Original strand, 2322582 - 2322656
Alignment:
| Q |
559 |
gacacttgttaatgatttaaaa-tgaaaacaaatgataatttttatgtaaaagaaaattgatttttaatgtttcaa |
633 |
Q |
| |
|
|||||||||||| ||||||||| |||||||| |||||||| | ||||| || ||||||||||||| ||||||||| |
|
|
| T |
2322582 |
gacacttgttaaagatttaaaaatgaaaacatttgataattatcatgtagaa-aaaattgatttttgatgtttcaa |
2322656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 576 - 630
Target Start/End: Complemental strand, 18915637 - 18915584
Alignment:
| Q |
576 |
taaaatgaaaacaaatgataatttttatgtaaaagaaaattgatttttaatgttt |
630 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||| ||||||| ||||| |||||| |
|
|
| T |
18915637 |
taaaatggaaacaattgataatttttatgtaaaa-aaaattgttttttgatgttt |
18915584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 577 - 651
Target Start/End: Original strand, 52820598 - 52820671
Alignment:
| Q |
577 |
aaaatgaaaacaaatgataatttttatgtaaaagaaaattgatttttaatgtttcaataggttgaacatacaaat |
651 |
Q |
| |
|
||||||||||||| | |||| ||||||||| || ||||||| ||||| ||| ||||||| |||||||| |||||| |
|
|
| T |
52820598 |
aaaatgaaaacaattaataacttttatgtataa-aaaattgttttttgatgcttcaatatgttgaacacacaaat |
52820671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 577 - 642
Target Start/End: Original strand, 50890705 - 50890770
Alignment:
| Q |
577 |
aaaatgaaaacaaatgataatttttatgtaaaagaaaattgatttttaatgtttcaataggttgaa |
642 |
Q |
| |
|
|||||| |||||| || ||| |||||||||||| ||| ||| ||||||| ||||||||||||||| |
|
|
| T |
50890705 |
aaaatggaaacaattgctaaattttatgtaaaaaaaagttgctttttaaaatttcaataggttgaa |
50890770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 561 - 653
Target Start/End: Original strand, 42154890 - 42154983
Alignment:
| Q |
561 |
cacttgttaatgatttaaaa-tgaaaacaaatgataatttttatgtaaaagaaaattgatttttaatgtttcaataggttgaacatacaaatct |
653 |
Q |
| |
|
|||||| ||| ||||||||| || ||| || |||||||||||||| | || ||||||| ||||| ||||||||||| || ||| |||||||||| |
|
|
| T |
42154890 |
cacttgctaaagatttaaaaatgtaaataattgataatttttatgcacaaaaaaattgtttttttatgtttcaatatgtcgaatatacaaatct |
42154983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 564 - 634
Target Start/End: Complemental strand, 12204747 - 12204677
Alignment:
| Q |
564 |
ttgttaatgattta-aaatgaaaacaaatgataatttttatgtaaaagaaaattgatttttaatgtttcaat |
634 |
Q |
| |
|
|||||||||||||| ||||| |||||| ||||||||||| ||||||| ||| || |||||||||||||||| |
|
|
| T |
12204747 |
ttgttaatgatttagaaatggaaacaattgataatttttctgtaaaa-aaatatgttttttaatgtttcaat |
12204677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University