View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16714_high_32 (Length: 236)
Name: NF16714_high_32
Description: NF16714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16714_high_32 |
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| [»] scaffold0459 (1 HSPs) |
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| [»] scaffold0366 (1 HSPs) |
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Alignment Details
Target: scaffold0459 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: scaffold0459
Description:
Target: scaffold0459; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 3175 - 3396
Alignment:
| Q |
1 |
cagaaaccatttttaacaaatcatcaaattatagagcataaaaaattgccagcatttgttgatccattgtccaacacattgatttgaccaaagattttgc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3175 |
cagaaaccatttttaacaaatcatcaaattatagagcataaaaaattgccagcatttgttgatccattgtccaacacattgatttgaccaaagattttgc |
3274 |
T |
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| Q |
101 |
tttgcaaattggacacatgaatccaacagaattttattgtatgttagaatcaacttgttaaactctattctgcaccatagacatgcgattgtgagctgan |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3275 |
tttgcaaattggacacatgaatccaacagaattttattgtatgttagaatcaacttgttaaactctattctgcaccatagacatgcgattgtgagctgat |
3374 |
T |
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| Q |
201 |
nnnnnnaatgcatgcatataat |
222 |
Q |
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|||||||||||||||| |
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| T |
3375 |
ttttttaatgcatgcatataat |
3396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0366 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: scaffold0366
Description:
Target: scaffold0366; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 3175 - 3396
Alignment:
| Q |
1 |
cagaaaccatttttaacaaatcatcaaattatagagcataaaaaattgccagcatttgttgatccattgtccaacacattgatttgaccaaagattttgc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3175 |
cagaaaccatttttaacaaatcatcaaattatagagcataaaaaattgccagcatttgttgatccattgtccaacacattgatttgaccaaagattttgc |
3274 |
T |
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| Q |
101 |
tttgcaaattggacacatgaatccaacagaattttattgtatgttagaatcaacttgttaaactctattctgcaccatagacatgcgattgtgagctgan |
200 |
Q |
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| T |
3275 |
tttgcaaattggacacatgaatccaacagaattttattgtatgttagaatcaacttgttaaactctattctgcaccatagacatgcgattgtgagctgat |
3374 |
T |
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| Q |
201 |
nnnnnnaatgcatgcatataat |
222 |
Q |
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|||||||||||||||| |
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| T |
3375 |
ttttttaatgcatgcatataat |
3396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 201; Significance: 1e-110; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 44371677 - 44371456
Alignment:
| Q |
1 |
cagaaaccatttttaacaaatcatcaaattatagagcataaaaaattgccagcatttgttgatccattgtccaacacattgatttgaccaaagattttgc |
100 |
Q |
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| T |
44371677 |
cagaaaccatttttaacaaatcatcaaattatagagcataaaaaattgccagcatttgttgatccattgtccaacacattgatttgaccaaagattttgc |
44371578 |
T |
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| Q |
101 |
tttgcaaattggacacatgaatccaacagaattttattgtatgttagaatcaacttgttaaactctattctgcaccatagacatgcgattgtgagctgan |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44371577 |
tttgcaaattggacacatgaatccaacagaattttattgtatgttagaatcaacttgttaaactctattctgcaccatagacatgcgattgtgagctgat |
44371478 |
T |
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| Q |
201 |
nnnnnnaatgcatgcatataat |
222 |
Q |
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|||||||||||||||| |
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| T |
44371477 |
ttttttaatgcatgcatataat |
44371456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 48 - 199
Target Start/End: Original strand, 1739001 - 1739160
Alignment:
| Q |
48 |
gccagcatttgttgatccattgtccaacacattgatttgaccaaaga-ttttgctttgcaaattggacacatgaatccaacagaattttattgtatgtta |
146 |
Q |
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||||||||||| ||||||| ||||||||||||||||||||||| ||| |||||| ||||||| ||||||||||||||||||||||| | ||||||| | | |
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| T |
1739001 |
gccagcatttggtgatccactgtccaacacattgatttgaccagagatttttgccttgcaaactggacacatgaatccaacagaatctgattgtatttca |
1739100 |
T |
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| Q |
147 |
gaatcaac-------ttgttaaactctattctgcaccatagacatgcgattgtgagctga |
199 |
Q |
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| T |
1739101 |
gaattaacagcatcatggttaaactctattccacaccatacacatgtggttgtgagctga |
1739160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 48 - 142
Target Start/End: Original strand, 1727038 - 1727133
Alignment:
| Q |
48 |
gccagcatttgttgatccattgtccaacacattgatttgaccaaagat-tttgctttgcaaattggacacatgaatccaacagaattttattgtat |
142 |
Q |
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| T |
1727038 |
gccagtatttggtgatccactctccaacacattgatttgatcatagatatttgccttgcaaactggacacgttaatccaacagaatttgattgtat |
1727133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 72 - 131
Target Start/End: Original strand, 25088788 - 25088848
Alignment:
| Q |
72 |
caacacattgatttgaccaaagatttt-gctttgcaaattggacacatgaatccaacagaa |
131 |
Q |
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| T |
25088788 |
caacacattgctttgaccagatatttttgctttgcaaattggacacatgaatccagcagaa |
25088848 |
T |
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