View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16714_high_33 (Length: 224)
Name: NF16714_high_33
Description: NF16714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16714_high_33 |
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Alignment Details
Target: chr6 (Bit Score: 182; Significance: 1e-98; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 20669433 - 20669244
Alignment:
| Q |
1 |
atttacatgctatttttaaaattcaatacaatactaaggatcgtgaagcgaccacaatttaaaaccttgttaagatatagtagaaatgtaaagtgatgat |
100 |
Q |
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| T |
20669433 |
atttatatgctatttttaaaattcaatacaatactaaggatcgtgaagcgaccacaatttaaaaccttgttaagatatagtagaaatgtaaagtgatgat |
20669334 |
T |
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| Q |
101 |
aagatcataatataaatagaaacatgaatcatatttgtttactaaataaaacgctataccttagagaaccttatacatagttaaagaaca |
190 |
Q |
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| T |
20669333 |
aagaacataatataaatagaaacatgaatcatatttgtttactaaataaaacgctataccttagagaaccttatacatagttaaagaaca |
20669244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 224
Target Start/End: Complemental strand, 20669223 - 20669185
Alignment:
| Q |
185 |
agaacattgattcatgacttaccataccacttggcgagtt |
224 |
Q |
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| T |
20669223 |
agaacattgatt-atgacttaccataccacttggcgagtt |
20669185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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