View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16714_high_6 (Length: 579)
Name: NF16714_high_6
Description: NF16714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16714_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 531; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 531; E-Value: 0
Query Start/End: Original strand, 17 - 567
Target Start/End: Complemental strand, 39717354 - 39716804
Alignment:
| Q |
17 |
aatatttccaggtgaagctctgcttgatcttttgaattacctcaatgattcaaataatcaaatacaagattgggatagtcatttagtgagcccatgtttc |
116 |
Q |
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| T |
39717354 |
aatatttccaggtgaagctctgcttgatcttttgaattacctcaatgattcaaataatcaaatacaagattgggatagtcatttagtgagcccatgtttc |
39717255 |
T |
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| Q |
117 |
agctggtcacatgtcacttgtagaaatggacatgtcatatctctgtaagtttatccatcacataaaatacaaaatgtttcttactactgttttcataatc |
216 |
Q |
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| T |
39717254 |
agctggtcacatgtcacttgtagaaatggacatgtcatatctctgtaagtttatctatcacataaagtacaaaatgtttcttactactgttttcataatc |
39717155 |
T |
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| Q |
217 |
tagttttttcttcatattctcaaatattttttgctaatcaatctacaggaccctggcttctattggattttctggaacactttctccctcaattaccaga |
316 |
Q |
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| T |
39717154 |
tagttttttcttcatattctcaaatattttttgctaatcaatctacaggaccctggcttctattggattttctggaacactttctccctcaattaccaga |
39717055 |
T |
|
| Q |
317 |
ttgaaatatttggttaacttgtaagtctctttataattagttgacattaattagattggcagcttatccaactaatgaactatagcagcatgatgatgcc |
416 |
Q |
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| T |
39717054 |
ttgaaatatttggttaacttgtaagtctctttataattagttgacattaattagattggctgcttatccaactaatgaactatagcagcatgatgatgcc |
39716955 |
T |
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| Q |
417 |
ataacaattaaagtagtgtttggattttacttttcttagccatacaatgaagagtttgattttgatcgactgtcagagtaaaaagctttatactgcaaca |
516 |
Q |
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| T |
39716954 |
ataacaattaaagtagtgtttggattttacttttcttagccatacaatgaagagtttgattttgatcgactttcagagtaaaaagctttatactgcaaca |
39716855 |
T |
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| Q |
517 |
aaatcacaatcatatctgtgacattagaagtagttatgattaacgttaaat |
567 |
Q |
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| T |
39716854 |
aaatcacaatcatatttgtgacattagaagtagttatgattaacgttaaat |
39716804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 523 - 559
Target Start/End: Original strand, 36639762 - 36639798
Alignment:
| Q |
523 |
caatcatatctgtgacattagaagtagttatgattaa |
559 |
Q |
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| T |
36639762 |
caatcatatgtgtgactttagaagtagttatgattaa |
36639798 |
T |
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