View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16714_high_9 (Length: 500)
Name: NF16714_high_9
Description: NF16714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16714_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 95 - 451
Target Start/End: Complemental strand, 44199658 - 44199302
Alignment:
| Q |
95 |
gtagttagttagcttaattattgtttttgtagcattggatgtgaattgaggacacatcacacacacatcaagaagatggttggaatatcttaaaacttaa |
194 |
Q |
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| T |
44199658 |
gtagttagttagcttaattattgtttttgtagcattggatgagaattgaggacacatcacacacaaatcaaaaagatggttggaatatcttaaaacttaa |
44199559 |
T |
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| Q |
195 |
gttagacctaatacttgatatcacacgagtataagttgaaaaataatattttacttgaaaagtatttttcaaagtatattatatctaatgtaagactctt |
294 |
Q |
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| T |
44199558 |
gttagacctaatatttgatatcacacgagtataagttgaaaaataatattttacttgaaaagtatttttcaaagtatattatatctaatgtaagactctt |
44199459 |
T |
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| Q |
295 |
aatggcgctcaccagtgtttggcataatcttgaggccaaagttgttgaaaatgatcaagaggggatccaacgatggtaaatccctcatcccacatgagtt |
394 |
Q |
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| T |
44199458 |
aatggcactcaccagtgtttggcataatcttgaggccaaagttgttgaaaatgatcaagaggggatccaacgatggtaaatccctcagaccacatgagtt |
44199359 |
T |
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| Q |
395 |
tggggaggaaggaggagatgcgggcgaggccatagcccgaaaccccatctggggaac |
451 |
Q |
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| T |
44199358 |
tggggaagaaggaggatatgcgagcgaggccatagcccgaaacaccatctggggaac |
44199302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 454 - 497
Target Start/End: Original strand, 44199311 - 44199354
Alignment:
| Q |
454 |
atggtgtttctggctatggcctcgctcgcataccctccttcttc |
497 |
Q |
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| T |
44199311 |
atggtgtttcgggctatggcctcgctcgcatatcctccttcttc |
44199354 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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