View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16714_low_1 (Length: 1137)
Name: NF16714_low_1
Description: NF16714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16714_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 1036; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 1036; E-Value: 0
Query Start/End: Original strand, 18 - 1128
Target Start/End: Original strand, 47125843 - 47126965
Alignment:
| Q |
18 |
agtgtaactcaagttctgaatctgatttccattgaaataaagtttcaattgtccaagtttagagggaatgaggattcaatgtctaatttgcaagaaatgg |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47125843 |
agtgtaactcaagttctgaatctgatttccattgaaataaagtttcaattgtccgagtttagagggaatgaggattcaatgtctaatttgcaagaaatgg |
47125942 |
T |
|
| Q |
118 |
atgaccttttatcaccttttccttttttcttgtattacctttgcatattctaaggattttctagtgttgtgtcatttcatcctttgctctttcattcaca |
217 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47125943 |
atgaccttttatcatcttttccttttttcttgtattacctttgcatattctaaggattttctagtgttgtgtcatttcatcctttgctctttcattcaca |
47126042 |
T |
|
| Q |
218 |
cagtagcacaaaaaccagttcggaaagtattacgaatgagcttggactaattaaaggagcaccaacatatgataatttgaagactaatgatattacatat |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47126043 |
cagtagcacaaaaaccagttcggaaagtattacgaatgagcttggactaattaaaggagcaccaacatatgataatttgaagactaatgatattacatat |
47126142 |
T |
|
| Q |
318 |
ttcattcgtacactctagtcttggcataacaagaagataaaaatacaagaatatggtaggcatacacataatttattcactatgaagcacggacacagac |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47126143 |
ttcattcgtacactctagtcttggcataacaagaagataaaaatacaagaatatggtaggcatacacataatttattcactatgaagcacggacacagac |
47126242 |
T |
|
| Q |
418 |
ac-----acgacacttacatgatgacaccaataataatttaaga---tgaaataattgaatgtacccacatatgtttggatcgtgtcggacaccaaac-- |
507 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
47126243 |
acttgacacgacacttacatgatgacaccaataataatttaagaaaatgaaataattgaatgtacccacatatgtttggatcgtgtcgaacaccaaacac |
47126342 |
T |
|
| Q |
508 |
--cttcaatctaaagtgtcggtgatacatagtttattcgataccaaagctaagtctttggttagataaatagcaagaattcaaagagaatggtttcagat |
605 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
47126343 |
accttcaatctaaagtgtcggtgatacatagtttattcgacaccaaagctaagtctttggttagataaatagcaaaaattcaaagagaatggtttcagat |
47126442 |
T |
|
| Q |
606 |
ggatatgctgttgggaattcccttaccagtgagtccaccctccctagaataatcagaggtattgggaaacagaagggtatatggcaatttcactggccca |
705 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
47126443 |
ggatatgctgttgggaattcccttaccagtgagtccaccctccctagaataatcagaggtattgggaaacagaagggtataaggcaatttcactggccca |
47126542 |
T |
|
| Q |
706 |
tttctgttcttcaaacttgggtctttgttccttttcatgatattattctcaatctccagtagcttctgtgaaaatcgcctaaatgctgccaatggttcag |
805 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47126543 |
tttctgttcttcaaacttgggtccttgttccttttcatgatattattctcaatctccagtagcttctgtgaaaatcgcctaaatgctgccaatggttcag |
47126642 |
T |
|
| Q |
806 |
cgtctgcagtccaatcagggtctactgtctgcccaagataaacctcttcagtcgaatgcctagacagaacttctatcaatgacacaccaagaagagtttg |
905 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47126643 |
cgtctgcagtccaatcagggtctactgtctgtccaagataaacctcttcagtcgaatgcctagacagaacttctatcaatgacacaccaagaagagtttg |
47126742 |
T |
|
| Q |
906 |
gaactgagctgtgattgtttttaagaatgctaattcaggatctgactcaagctcttcatactctggtgtaccttgctcaggcataaacctacgactaacc |
1005 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47126743 |
gaactgagctgtgattgtttttaagaatgctaattcaggatctgactcaagctcttcatactctggtgtaccttgctcaggcataaacctacgactaacc |
47126842 |
T |
|
| Q |
1006 |
gttggacgatttggtaggtaacctgcataagggtattgtccaaagttcacagctgcatgaaaagcagaagccacccatatgataatggtgcaagattgta |
1105 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
47126843 |
gttggacgatttggtaggtaacctgcataagggtattgtccaaagttcacagctgcatgaaaagcagaagccacccatataataatggtgcaagattgta |
47126942 |
T |
|
| Q |
1106 |
tgagatcgattcttgtcttcatt |
1128 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
47126943 |
tgagatcgattcttgtcttcatt |
47126965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 1024 - 1093
Target Start/End: Complemental strand, 9606339 - 9606270
Alignment:
| Q |
1024 |
taacctgcataagggtattgtccaaagttcacagctgcatgaaaagcagaagccacccatatgataatgg |
1093 |
Q |
| |
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|||||| ||||||| ||||||||||| || ||||||||||||| ||||||||| |||||||||||||| |
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|
| T |
9606339 |
taacctccataaggatattgtccaaaattaacagctgcatgaagagcagaagcagtccatatgataatgg |
9606270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 1006 - 1085
Target Start/End: Original strand, 46709155 - 46709234
Alignment:
| Q |
1006 |
gttggacgatttggtaggtaacctgcataagggtattgtccaaagttcacagctgcatgaaaagcagaagccacccatat |
1085 |
Q |
| |
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|||||||| |||||| |||||||||| |||| |||||||||||||| ||||||||||| | ||| ||||| | |||||| |
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| T |
46709155 |
gttggacggtttggtgagtaacctgcaaaaggatattgtccaaagtttacagctgcatgtagagctgaagcaatccatat |
46709234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000007; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 1031 - 1103
Target Start/End: Original strand, 6456151 - 6456223
Alignment:
| Q |
1031 |
cataagggtattgtccaaagttcacagctgcatgaaaagcagaagccacccatatgataatggtgcaagattg |
1103 |
Q |
| |
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||||||| || ||||||||||| || |||||||||| ||| ||||| |||||||||||||| ||||||||| |
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|
| T |
6456151 |
cataaggatactgtccaaagttaactgctgcatgaagagctgaagcagtccatatgataatggagcaagattg |
6456223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1033 - 1103
Target Start/End: Original strand, 6449686 - 6449756
Alignment:
| Q |
1033 |
taagggtattgtccaaagttcacagctgcatgaaaagcagaagccacccatatgataatggtgcaagattg |
1103 |
Q |
| |
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||||| |||||||| || || ||||||||||||| ||||||||| |||||| ||||||| ||||||||| |
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| T |
6449686 |
taaggatattgtccgaaattaacagctgcatgaagagcagaagcagtccatataataatggagcaagattg |
6449756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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