View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16714_low_13 (Length: 490)

Name: NF16714_low_13
Description: NF16714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16714_low_13
NF16714_low_13
[»] chr1 (20 HSPs)
chr1 (21-473)||(28937877-28938330)
chr1 (207-273)||(7218102-7218168)
chr1 (234-291)||(28467362-28467420)
chr1 (234-291)||(30371105-30371163)
chr1 (207-291)||(25479538-25479623)
chr1 (234-298)||(29007771-29007836)
chr1 (234-298)||(49517020-49517085)
chr1 (213-273)||(25005831-25005891)
chr1 (238-297)||(38578478-38578538)
chr1 (236-298)||(4200179-4200242)
chr1 (240-298)||(15360844-15360903)
chr1 (234-273)||(15361689-15361728)
chr1 (207-297)||(16322800-16322891)
chr1 (214-273)||(17269226-17269285)
chr1 (234-273)||(25006089-25006128)
chr1 (207-296)||(6932989-6933079)
chr1 (247-297)||(29793991-29794041)
chr1 (245-298)||(44936656-44936710)
chr1 (207-291)||(34179900-34179985)
chr1 (234-297)||(36070201-36070265)
[»] chr4 (21 HSPs)
chr4 (207-298)||(49219089-49219181)
chr4 (239-297)||(4071833-4071892)
chr4 (234-291)||(8130131-8130189)
chr4 (235-297)||(10192235-10192298)
chr4 (207-289)||(52735081-52735164)
chr4 (241-298)||(11917509-11917567)
chr4 (234-291)||(30207626-30207683)
chr4 (234-297)||(45128365-45128429)
chr4 (234-297)||(49085940-49086004)
chr4 (234-296)||(55870396-55870459)
chr4 (207-273)||(21157744-21157810)
chr4 (234-291)||(24160550-24160608)
chr4 (207-272)||(26747430-26747496)
chr4 (236-297)||(42321936-42321998)
chr4 (234-267)||(11842197-11842230)
chr4 (235-297)||(8422895-8422956)
chr4 (207-251)||(12650312-12650356)
chr4 (235-290)||(18630638-18630694)
chr4 (234-297)||(24160941-24161005)
chr4 (234-297)||(24929444-24929508)
chr4 (207-297)||(43371999-43372088)
[»] chr7 (14 HSPs)
chr7 (207-267)||(40439036-40439096)
chr7 (369-466)||(40325525-40325622)
chr7 (234-297)||(1417215-1417279)
chr7 (207-283)||(36370635-36370711)
chr7 (234-273)||(24909640-24909679)
chr7 (235-273)||(24895332-24895370)
chr7 (207-294)||(17989051-17989139)
chr7 (237-297)||(33894574-33894634)
chr7 (207-298)||(38010664-38010756)
chr7 (234-297)||(49060491-49060555)
chr7 (207-268)||(30812129-30812190)
chr7 (234-297)||(40689041-40689105)
chr7 (207-290)||(44151508-44151592)
chr7 (236-291)||(45777228-45777284)
[»] scaffold0049 (1 HSPs)
scaffold0049 (234-298)||(58148-58213)
[»] chr5 (16 HSPs)
chr5 (210-289)||(38047886-38047966)
chr5 (244-297)||(4991008-4991062)
chr5 (207-269)||(32408620-32408682)
chr5 (234-298)||(39823176-39823241)
chr5 (234-298)||(18704091-18704155)
chr5 (242-297)||(35135725-35135781)
chr5 (238-297)||(42181151-42181211)
chr5 (215-297)||(14295457-14295540)
chr5 (234-273)||(34205215-34205254)
chr5 (207-297)||(34690825-34690915)
chr5 (234-297)||(4855649-4855713)
chr5 (234-293)||(9634727-9634787)
chr5 (234-274)||(10272486-10272526)
chr5 (237-297)||(16458037-16458097)
chr5 (207-251)||(29201531-29201575)
chr5 (207-298)||(37588388-37588480)
[»] chr8 (11 HSPs)
chr8 (207-297)||(4558749-4558840)
chr8 (221-297)||(1470898-1470975)
chr8 (207-291)||(34551077-34551162)
chr8 (207-273)||(29973057-29973123)
chr8 (234-287)||(34770853-34770907)
chr8 (207-272)||(7645955-7646020)
chr8 (234-298)||(38561676-38561741)
chr8 (207-290)||(2093237-2093321)
chr8 (234-289)||(24558812-24558868)
chr8 (234-297)||(42597352-42597416)
chr8 (207-275)||(43709247-43709315)
[»] chr3 (19 HSPs)
chr3 (234-288)||(32555036-32555091)
chr3 (232-290)||(48364932-48364991)
chr3 (232-298)||(48397596-48397663)
chr3 (212-262)||(20502101-20502151)
chr3 (234-298)||(24235738-24235803)
chr3 (234-294)||(37788814-37788875)
chr3 (234-297)||(1395622-1395686)
chr3 (208-295)||(33965518-33965608)
chr3 (207-273)||(23315602-23315668)
chr3 (207-288)||(27792832-27792914)
chr3 (234-298)||(10101531-10101596)
chr3 (234-298)||(10212456-10212521)
chr3 (234-298)||(10357383-10357448)
chr3 (253-298)||(20143875-20143920)
chr3 (253-298)||(23269269-23269314)
chr3 (245-297)||(37689450-37689503)
chr3 (237-273)||(28779332-28779368)
chr3 (234-297)||(43116483-43116547)
chr3 (234-274)||(48807683-48807723)
[»] chr2 (19 HSPs)
chr2 (234-288)||(11513858-11513913)
chr2 (207-273)||(43141847-43141913)
chr2 (234-297)||(17952756-17952820)
chr2 (207-298)||(22681213-22681305)
chr2 (207-291)||(43635129-43635213)
chr2 (239-297)||(31740019-31740078)
chr2 (241-298)||(3423830-3423888)
chr2 (234-287)||(6993779-6993833)
chr2 (209-298)||(43199364-43199454)
chr2 (207-291)||(6988072-6988157)
chr2 (233-297)||(9878736-9878801)
chr2 (234-298)||(10143122-10143187)
chr2 (237-297)||(25609747-25609808)
chr2 (210-290)||(28803537-28803618)
chr2 (207-268)||(39983323-39983384)
chr2 (234-297)||(23143033-23143097)
chr2 (234-297)||(23554823-23554887)
chr2 (234-297)||(28933775-28933839)
chr2 (233-273)||(33944581-33944621)
[»] scaffold0549 (2 HSPs)
scaffold0549 (234-291)||(1779-1837)
scaffold0549 (234-291)||(3869-3927)
[»] chr6 (10 HSPs)
chr6 (234-291)||(11340680-11340738)
chr6 (208-297)||(28660789-28660879)
chr6 (234-297)||(1402947-1403011)
chr6 (234-297)||(2027461-2027525)
chr6 (234-297)||(4006665-4006729)
chr6 (234-297)||(9668040-9668104)
chr6 (207-285)||(32386591-32386670)
chr6 (207-291)||(281876-281961)
chr6 (207-291)||(27595595-27595680)
chr6 (238-297)||(10452419-10452479)
[»] scaffold0024 (1 HSPs)
scaffold0024 (234-298)||(27526-27591)


Alignment Details
Target: chr1 (Bit Score: 418; Significance: 0; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 21 - 473
Target Start/End: Complemental strand, 28938330 - 28937877
Alignment:
Q  21 gaccctcaaatcttgatcaaacagtccacgtgttttagcttgttttgcatgttaaaatacgaactatccgatcttaatcagacggattaaattgtgtgaa 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  28938330 gaccctcaaatcttgatcaaacagtccacgtgttttagcttgttttgcatgttaaaatacgagctatccgatcttaatcagaccgattaaattgtgtgaa 28938231  T
Q  121 tgcaggattgtcgcaactgcattccaactaacttgtgatatactatagtcctattttaattaatttatttgaacttatctactctgatttccataagctc 220  Q
    |||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28938230 tgcaggattgtctcaactgcattccgactaacttgtggtatactatagtcctattttaattaatttatttgaacttatctactctgatttccataagctc 28938131  T
Q  221 ttcaggattggtaatgaaaacaacttatagcgtatatgaaaataatttgacttatgttatc-ttttgttataaaaataaacattatcacttatatgaagc 319  Q
    | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  28938130 tccaggattggtaatgaaaacaacttatagcgtatatgaaaatgatttgacttatgttatctttttgttataaaaataaacattatcacttatatgaagc 28938031  T
Q  320 gcttaattaagttgtttatcgtgacagagtctaaatatgcattttatgtaacagggaattgcaagaagacttgtgaaagcagcacttagagaagcagcaa 419  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28938030 gcttaattaagttgtttatcgtgacagagtctaaatatgcattttatgtaacagggaattgcaagaagacttgtgaaagcagcacttagagaagcagcaa 28937931  T
Q  420 ggaaaagagagatgagactagcagaccttcaaaagattgaacaaggaacaagga 473  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28937930 ggaaaagagagatgagactagcagaccttcaaaagattgaacaaggaacaagga 28937877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 207 - 273
Target Start/End: Original strand, 7218102 - 7218168
Alignment:
Q  207 atttccataagctcttcaggattggtaatgaaaacaacttatagcgtatatgaaaataatttgactt 273  Q
    |||| |||||| ||| |||||| ||| |||||||||||||||||| |||||||||| ||||||||||    
T  7218102 attttcataagttctccaggataggttatgaaaacaacttatagcttatatgaaaacaatttgactt 7218168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 234 - 291
Target Start/End: Original strand, 28467362 - 28467420
Alignment:
Q  234 atgaaaacaacttatagcgtatatgaaaataatttgac-ttatgttatcttttgttata 291  Q
    ||||||||||||| |||| ||||||||||||||||||| |||| |||||||||||||||    
T  28467362 atgaaaacaacttgtagcttatatgaaaataatttgactttattttatcttttgttata 28467420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 234 - 291
Target Start/End: Complemental strand, 30371163 - 30371105
Alignment:
Q  234 atgaaaacaacttatagcgtatatgaaaataatttga-cttatgttatcttttgttata 291  Q
    |||||||||||||||||| |||||||||| |||||||  |||| |||||||||||||||    
T  30371163 atgaaaacaacttatagcttatatgaaaacaatttgagtttattttatcttttgttata 30371105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 207 - 291
Target Start/End: Complemental strand, 25479623 - 25479538
Alignment:
Q  207 atttccataagctcttcaggattggtaatgaaaacaacttatagcgtatatgaaaataatttgac-ttatgttatcttttgttata 291  Q
    |||| ||||||||||  ||||| | | |||||||||||||||||| |||||||| | |||||||| |||| |||||||| ||||||    
T  25479623 attttcataagctctctaggatagcttatgaaaacaacttatagcctatatgaagacaatttgacgttattttatctttggttata 25479538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 234 - 298
Target Start/End: Original strand, 29007771 - 29007836
Alignment:
Q  234 atgaaaacaacttatagcgtatatgaaaataatttgac-ttatgttatcttttgttataaaaataa 298  Q
    |||||||||||||||||| |||||||||||| |||||| |||  || |||||||||||| ||||||    
T  29007771 atgaaaacaacttatagcttatatgaaaatagtttgactttaatttttcttttgttatagaaataa 29007836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 234 - 298
Target Start/End: Complemental strand, 49517085 - 49517020
Alignment:
Q  234 atgaaaacaacttatagcgtatatgaaaataatttgactt-atgttatcttttgttataaaaataa 298  Q
    ||||||||| |||||||| || ||||||| |||||||||| || ||||||||||||||| ||||||    
T  49517085 atgaaaacagcttatagcttaaatgaaaacaatttgactttattttatcttttgttatagaaataa 49517020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 213 - 273
Target Start/End: Original strand, 25005831 - 25005891
Alignment:
Q  213 ataagctcttcaggattggtaatgaaaacaacttatagcgtatatgaaaataatttgactt 273  Q
    ||||||||| |||||| | | |||||||||||||||||| |||||||||| || |||||||    
T  25005831 ataagctctccaggatagcttatgaaaacaacttatagcttatatgaaaacaagttgactt 25005891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 238 - 297
Target Start/End: Complemental strand, 38578538 - 38578478
Alignment:
Q  238 aaacaacttatagcgtatatgaaaataatttgactt-atgttatcttttgttataaaaata 297  Q
    |||||||||||||| ||||  |||||||||| |||| |||||||||||||||||| |||||    
T  38578538 aaacaacttatagcttatacaaaaataatttaactttatgttatcttttgttatagaaata 38578478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 236 - 298
Target Start/End: Complemental strand, 4200242 - 4200179
Alignment:
Q  236 gaaaacaacttatagcgtatatgaaaataatttgactt-atgttatcttttgttataaaaataa 298  Q
    ||||||||  |||||| |||||||||| || ||||||| || ||||||||||||||||||||||    
T  4200242 gaaaacaatatatagcttatatgaaaacaacttgactttattttatcttttgttataaaaataa 4200179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 298
Target Start/End: Complemental strand, 15360903 - 15360844
Alignment:
Q  240 acaacttatagcgtatatgaaaataatttgac-ttatgttatcttttgttataaaaataa 298  Q
    |||||||||||| |||||||||| | |||||| |||| ||||||||||||||| ||||||    
T  15360903 acaacttatagcttatatgaaaacagtttgactttattttatcttttgttatagaaataa 15360844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 234 - 273
Target Start/End: Complemental strand, 15361728 - 15361689
Alignment:
Q  234 atgaaaacaacttatagcgtatatgaaaataatttgactt 273  Q
    ||||||||| |||||||| |||||||||||||||||||||    
T  15361728 atgaaaacagcttatagcttatatgaaaataatttgactt 15361689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 207 - 297
Target Start/End: Complemental strand, 16322891 - 16322800
Alignment:
Q  207 atttccataagctcttcaggattggtaatgaaaacaacttatagcgtatatgaaaataatttgact-tatgttatcttttgttataaaaata 297  Q
    ||||||||||||||||||  || |   ||||||||| |||||| | | |||||||||| ||||||| ||| |||||||||| ||||||||||    
T  16322891 atttccataagctcttcaaaatagcctatgaaaacagcttataacttctatgaaaatagtttgactatattttatcttttgatataaaaata 16322800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 214 - 273
Target Start/End: Complemental strand, 17269285 - 17269226
Alignment:
Q  214 taagctcttcaggattggtaatgaaaacaacttatagcgtatatgaaaataatttgactt 273  Q
    |||||||| |||||| | | ||||||||||||||| || |||||||||| ||||||||||    
T  17269285 taagctctccaggatagcttatgaaaacaacttattgcttatatgaaaacaatttgactt 17269226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 234 - 273
Target Start/End: Original strand, 25006089 - 25006128
Alignment:
Q  234 atgaaaacaacttatagcgtatatgaaaataatttgactt 273  Q
    |||||||||||||||||| |||||||||| ||||||||||    
T  25006089 atgaaaacaacttatagcttatatgaaaacaatttgactt 25006128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 207 - 296
Target Start/End: Original strand, 6932989 - 6933079
Alignment:
Q  207 atttccataagctcttcaggattggtaatgaaaacaacttatagcgtatatgaaaataatttgac-ttatgttatcttttgttataaaaat 296  Q
    |||||||||||||||||||||    | ||||||| |||| ||| | | |||||||| |||||||| |||| |||| |||||||||||||||    
T  6932989 atttccataagctcttcaggacaacttatgaaaagaactaataacttctatgaaaacaatttgactttattttatgttttgttataaaaat 6933079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 247 - 297
Target Start/End: Original strand, 29793991 - 29794041
Alignment:
Q  247 atagcgtatatgaaaataatttgacttatgttatcttttgttataaaaata 297  Q
    ||||| ||| |||||| |||||||||||| ||||||||||||| |||||||    
T  29793991 atagcttatttgaaaacaatttgacttattttatcttttgttacaaaaata 29794041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 245 - 298
Target Start/End: Original strand, 44936656 - 44936710
Alignment:
Q  245 ttatagcgtatatgaaaataatttgac-ttatgttatcttttgttataaaaataa 298  Q
    ||||||| |||||||||||| |||||| |||| ||||||||||||||| ||||||    
T  44936656 ttatagcttatatgaaaatagtttgactttatcttatcttttgttatagaaataa 44936710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 207 - 291
Target Start/End: Original strand, 34179900 - 34179985
Alignment:
Q  207 atttccataagctcttcaggattggtaatgaaaacaacttatagcgtatatgaaaataatttgactt-atgttatcttttgttata 291  Q
    |||||||||| || |||||||| | | |||||||||  ||||||| || || |||| |||||||||| || |||||||||||||||    
T  34179900 atttccataaacttttcaggatagtttatgaaaacagtttatagcttagattaaaacaatttgactttattttatcttttgttata 34179985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 234 - 297
Target Start/End: Complemental strand, 36070265 - 36070201
Alignment:
Q  234 atgaaaacaacttatagcgtatatgaaaataatttgactt-atgttatcttttgttataaaaata 297  Q
    |||||||||||||||||| |||  ||| | ||||| |||| || |||||||||||||||||||||    
T  36070265 atgaaaacaacttatagcttatccgaagacaatttaactttattttatcttttgttataaaaata 36070201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 207 - 298
Target Start/End: Complemental strand, 49219181 - 49219089
Alignment:
Q  207 atttccataagctcttcaggattggtaatgaaaacaacttatagcgtatatgaaaataatttgac-ttatgttatcttttgttataaaaataa 298  Q
    |||||||||| ||||| | ||| | | |||||||||||||||||| ||||||||||||||||||| |||| |||| |||||||||| ||||||    
T  49219181 atttccataatctctttaagatagtttatgaaaacaacttatagcttatatgaaaataatttgactttattttatattttgttatagaaataa 49219089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 239 - 297
Target Start/End: Complemental strand, 4071892 - 4071833
Alignment:
Q  239 aacaacttatagcgtatatgaaaataatttgac-ttatgttatcttttgttataaaaata 297  Q
    ||||||||||||| ||||||||||||||||||| |||| ||||||||||||||| |||||    
T  4071892 aacaacttatagcttatatgaaaataatttgactttattttatcttttgttatagaaata 4071833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 234 - 291
Target Start/End: Complemental strand, 8130189 - 8130131
Alignment:
Q  234 atgaaaacaacttatagcgtatatgaaaataatttgac-ttatgttatcttttgttata 291  Q
    |||||||||  ||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  8130189 atgaaaacagtttatagcttatatgaaaataatttgactttatgttatcttttgttata 8130131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 235 - 297
Target Start/End: Complemental strand, 10192298 - 10192235
Alignment:
Q  235 tgaaaacaacttatagcgtatatgaaaataatttgac-ttatgttatcttttgttataaaaata 297  Q
    ||||||||||||||| | |||||||||| |||||||| ||||  ||||||||||||||||||||    
T  10192298 tgaaaacaacttataacttatatgaaaacaatttgactttattctatcttttgttataaaaata 10192235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 207 - 289
Target Start/End: Complemental strand, 52735164 - 52735081
Alignment:
Q  207 atttccataagctcttcaggattggtaatgaaaacaacttatagcgtatatgaaaataatttgac-ttatgttatcttttgtta 289  Q
    |||||||||||||||||| ||| | | | ||||||||| |||| | ||||||||| ||||||||| |||| |||||||||||||    
T  52735164 atttccataagctcttcaagatagcttacgaaaacaacatataacttatatgaaagtaatttgactttattttatcttttgtta 52735081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 241 - 298
Target Start/End: Complemental strand, 11917567 - 11917509
Alignment:
Q  241 caacttatagcgtatatgaaaataatttgac-ttatgttatcttttgttataaaaataa 298  Q
    ||||||||||  ||||||||||||||||||| |||| ||||||||||||| ||||||||    
T  11917567 caacttataggttatatgaaaataatttgactttattttatcttttgttacaaaaataa 11917509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 234 - 291
Target Start/End: Original strand, 30207626 - 30207683
Alignment:
Q  234 atgaaaacaacttatagcgtatatgaaaataatttgacttatgttatcttttgttata 291  Q
    |||||||||||||||||| |||||||||| | ||||| |||| |||| ||||||||||    
T  30207626 atgaaaacaacttatagcttatatgaaaacagtttgatttattttattttttgttata 30207683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 234 - 297
Target Start/End: Original strand, 45128365 - 45128429
Alignment:
Q  234 atgaaaacaacttatagcgtatatgaaaataatttgactt-atgttatcttttgttataaaaata 297  Q
    |||||||||| ||||||| ||||||| |||||||||| || || ||||||||||||||| |||||    
T  45128365 atgaaaacaatttatagcttatatgagaataatttgatttgattttatcttttgttatagaaata 45128429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 234 - 297
Target Start/End: Complemental strand, 49086004 - 49085940
Alignment:
Q  234 atgaaaacaacttatagcgtatatgaaaataatttgac-ttatgttatcttttgttataaaaata 297  Q
    |||||||||||||||| | | |||||||||| |||||| |||| ||||||||||||||| |||||    
T  49086004 atgaaaacaacttataacttgtatgaaaatagtttgacattattttatcttttgttatataaata 49085940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 234 - 296
Target Start/End: Original strand, 55870396 - 55870459
Alignment:
Q  234 atgaaaacaacttatagcgtatatgaaaataatttgac-ttatgttatcttttgttataaaaat 296  Q
    |||||||||||||||||| ||| |||||| | |||||| |||| | ||||||||||||||||||    
T  55870396 atgaaaacaacttatagcttatgtgaaaacagtttgactttatttgatcttttgttataaaaat 55870459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 207 - 273
Target Start/End: Complemental strand, 21157810 - 21157744
Alignment:
Q  207 atttccataagctcttcaggattggtaatgaaaacaacttatagcgtatatgaaaataatttgactt 273  Q
    |||||||||||||||||||||| |   ||||||||| |||||||| || ||||||| | ||||||||    
T  21157810 atttccataagctcttcaggatagcatatgaaaacatcttatagcttacatgaaaacagtttgactt 21157744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 234 - 291
Target Start/End: Original strand, 24160550 - 24160608
Alignment:
Q  234 atgaaaacaacttatagcgtatatgaaaataatttg-acttatgttatcttttgttata 291  Q
    |||||||||||||||||| || ||||||||| |||| | |||| |||||||||||||||    
T  24160550 atgaaaacaacttatagcttacatgaaaatagtttgaatttatattatcttttgttata 24160608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 207 - 272
Target Start/End: Original strand, 26747430 - 26747496
Alignment:
Q  207 atttccataagctcttcaggattggtaatgaaaacaacttat-agcgtatatgaaaataatttgact 272  Q
    ||||||||||| |||| |||||   ||||||||||||||||| ||| |||||||||||| |||||||    
T  26747430 atttccataagttctttaggataactaatgaaaacaacttataagcttatatgaaaatagtttgact 26747496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 236 - 297
Target Start/End: Original strand, 42321936 - 42321998
Alignment:
Q  236 gaaaacaacttatagcgtatatgaaaataatttgac-ttatgttatcttttgttataaaaata 297  Q
    ||||||||||||||   |||||||||| |||||||| |||| ||||| |||||||||||||||    
T  42321936 gaaaacaacttataatttatatgaaaacaatttgactttattttatcatttgttataaaaata 42321998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 234 - 267
Target Start/End: Complemental strand, 11842230 - 11842197
Alignment:
Q  234 atgaaaacaacttatagcgtatatgaaaataatt 267  Q
    |||||||||||||||||| |||||||||||||||    
T  11842230 atgaaaacaacttatagcttatatgaaaataatt 11842197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 235 - 297
Target Start/End: Original strand, 8422895 - 8422956
Alignment:
Q  235 tgaaaacaacttatagcgtatatgaaaataatttgac-ttatgttatcttttgttataaaaata 297  Q
    ||||||||||||||||| |||||||||| ||  |||| |||| ||||||||| |||||||||||    
T  8422895 tgaaaacaacttatagcttatatgaaaacaa--tgactttattttatctttttttataaaaata 8422956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 207 - 251
Target Start/End: Original strand, 12650312 - 12650356
Alignment:
Q  207 atttccataagctcttcaggattggtaatgaaaacaacttatagc 251  Q
    ||||||||||||||| |||||| ||| ||||||||| ||||||||    
T  12650312 atttccataagctctccaggataggttatgaaaacagcttatagc 12650356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 235 - 290
Target Start/End: Complemental strand, 18630694 - 18630638
Alignment:
Q  235 tgaaaacaacttatagcgtatatgaaaataatttgac-ttatgttatcttttgttat 290  Q
    ||||||||||||||||| ||||||||||  | ||||| |||| ||||||||||||||    
T  18630694 tgaaaacaacttatagcttatatgaaaaccaattgactttattttatcttttgttat 18630638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 234 - 297
Target Start/End: Complemental strand, 24161005 - 24160941
Alignment:
Q  234 atgaaaacaacttatagcgtatatgaaaataatttgactt-atgttatcttttgttataaaaata 297  Q
    ||||| |||||||||||| || ||||||||||||| |||| || ||||| ||||||||| |||||    
T  24161005 atgaacacaacttatagcctacatgaaaataatttaacttgattttatcctttgttatagaaata 24160941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 234 - 297
Target Start/End: Complemental strand, 24929508 - 24929444
Alignment:
Q  234 atgaaaacaacttatagcgtatatgaaaataatttgac-ttatgttatcttttgttataaaaata 297  Q
    |||||||||||||||||| | |||||||| | || ||| |||| ||||||||||||||| |||||    
T  24929508 atgaaaacaacttatagcttttatgaaaacagttagactttattttatcttttgttatagaaata 24929444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 207 - 297
Target Start/End: Original strand, 43371999 - 43372088
Alignment:
Q  207 atttccataagctcttcaggattggtaatgaaaacaacttatagcgtatatgaaaataatttgact-tatgttatcttttgttataaaaata 297  Q
    ||||||||||||||||  |||| | | |||||| ||  ||||||| ||||| |||| | ||||||| ||| |||||||||||||||||||||    
T  43371999 atttccataagctctt--ggatagcttatgaaatcagtttatagcttatataaaaacagtttgactgtattttatcttttgttataaaaata 43372088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 207 - 267
Target Start/End: Complemental strand, 40439096 - 40439036
Alignment:
Q  207 atttccataagctcttcaggattggtaatgaaaacaacttatagcgtatatgaaaataatt 267  Q
    |||||||||||||||||||||| | |||||||||||||||||| | |||||||||| ||||    
T  40439096 atttccataagctcttcaggatagctaatgaaaacaacttataacatatatgaaaacaatt 40439036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 369 - 466
Target Start/End: Complemental strand, 40325622 - 40325525
Alignment:
Q  369 aacagggaattgcaagaagacttgtgaaagcagcacttagagaagcagcaaggaaaagagagatgagactagcagaccttcaaaagattgaacaagga 466  Q
    |||||||||| || || || ||||||||||||||||||| ||||||||| | |||  |||| || ||| || ||||||| |||||||| |||||||||    
T  40325622 aacagggaatagctaggaggcttgtgaaagcagcacttaaagaagcagctaagaagcgagaaataagattatcagacctccaaaagatcgaacaagga 40325525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 234 - 297
Target Start/End: Complemental strand, 1417279 - 1417215
Alignment:
Q  234 atgaaaacaacttatagcgtatatgaaaataatttgac-ttatgttatcttttgttataaaaata 297  Q
    ||||||||||||||| || |||||||||| |||||||| |||| ||||||||||||||| |||||    
T  1417279 atgaaaacaacttattgcttatatgaaaacaatttgactttattttatcttttgttatataaata 1417215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 207 - 283
Target Start/End: Complemental strand, 36370711 - 36370635
Alignment:
Q  207 atttccataagctcttcaggattggtaatgaaaacaacttatagcgtatatgaaaataatttgacttatgttatctt 283  Q
    |||||||||||||||||||||| | | ||| |||||||||||||| ||| |||||| | ||| |||||| |||||||    
T  36370711 atttccataagctcttcaggatagtttatggaaacaacttatagcttatgtgaaaacagtttaacttattttatctt 36370635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 234 - 273
Target Start/End: Complemental strand, 24909679 - 24909640
Alignment:
Q  234 atgaaaacaacttatagcgtatatgaaaataatttgactt 273  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  24909679 atgaaaacaacttatagcttatatgaaaataatttgactt 24909640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 235 - 273
Target Start/End: Complemental strand, 24895370 - 24895332
Alignment:
Q  235 tgaaaacaacttatagcgtatatgaaaataatttgactt 273  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  24895370 tgaaaacaacttatagcttatatgaaaataatttgactt 24895332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 207 - 294
Target Start/End: Original strand, 17989051 - 17989139
Alignment:
Q  207 atttccataagctcttcaggattggtaatgaaaacaacttatagcgtatatgaaaataatttgac-ttatgttatcttttgttataaaa 294  Q
    |||| ||||||||||||||||  | | |||||||||| ||||||  |||||||||| | |||||| |||| |||| |||||||||||||    
T  17989051 attttcataagctcttcaggagagcttatgaaaacaaattatagtttatatgaaaacagtttgactttattttatattttgttataaaa 17989139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 237 - 297
Target Start/End: Complemental strand, 33894634 - 33894574
Alignment:
Q  237 aaaacaacttatagcgtatatgaaaataatttgacttatgttatcttttgttataaaaata 297  Q
    |||||||| || ||| |||||||||| | |||||||||| ||||||||||||||| |||||    
T  33894634 aaaacaacataaagcttatatgaaaacagtttgacttattttatcttttgttatagaaata 33894574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 207 - 298
Target Start/End: Complemental strand, 38010756 - 38010664
Alignment:
Q  207 atttccataagctcttcaggattggtaatgaaaacaacttatagcgtatatgaaaataatttgac-ttatgttatcttttgttataaaaataa 298  Q
    ||||||||||| |||  ||||| | | ||||||||| |||||||| |||||||||| |||||| | || | |||||||||||| |||||||||    
T  38010756 atttccataagttctctaggatagattatgaaaacagcttatagcttatatgaaaacaatttggctttgttttatcttttgttttaaaaataa 38010664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 234 - 297
Target Start/End: Complemental strand, 49060555 - 49060491
Alignment:
Q  234 atgaaaacaacttatagcgtatatgaaaataatttgac-ttatgttatcttttgttataaaaata 297  Q
    ||||||| |||||||||| ||||| ||||||||||||| |||| |||| |||||||||| |||||    
T  49060555 atgaaaataacttatagcttatataaaaataatttgactttattttattttttgttatagaaata 49060491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 207 - 268
Target Start/End: Complemental strand, 30812190 - 30812129
Alignment:
Q  207 atttccataagctcttcaggattggtaatgaaaacaacttatagcgtatatgaaaataattt 268  Q
    ||||||||||||||| || ||| | ||||||||||| |||||||| |||| ||||| |||||    
T  30812190 atttccataagctctccatgatagctaatgaaaacagcttatagcttatacgaaaacaattt 30812129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 234 - 297
Target Start/End: Original strand, 40689041 - 40689105
Alignment:
Q  234 atgaaaacaacttatagcgtatatgaaaataatttgac-ttatgttatcttttgttataaaaata 297  Q
    ||||| ||| |||||||| |||||||||||||||| || |||| |||||||||| |||| |||||    
T  40689041 atgaacacagcttatagcttatatgaaaataatttaactttattttatcttttgctatagaaata 40689105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 207 - 290
Target Start/End: Original strand, 44151508 - 44151592
Alignment:
Q  207 atttccataagctcttcaggattggtaatgaaaacaacttatagcgtatatgaaaataatttgac-ttatgttatcttttgttat 290  Q
    ||||||||||||| |||| ||| | | |||||||||||||||||| |||||| ||| | ||| || ||||  |||||||||||||    
T  44151508 atttccataagcttttcaagatagtttatgaaaacaacttatagcttatatggaaacagttttactttattctatcttttgttat 44151592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 236 - 291
Target Start/End: Original strand, 45777228 - 45777284
Alignment:
Q  236 gaaaacaacttatagcgtatatgaaaataatttgactt-atgttatcttttgttata 291  Q
    |||||||||||||||  |||||||||| | |||||||| || |||||||||||||||    
T  45777228 gaaaacaacttatagtttatatgaaaacagtttgacttaattttatcttttgttata 45777284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 234 - 298
Target Start/End: Original strand, 58148 - 58213
Alignment:
Q  234 atgaaaacaacttatagcgtatatgaaaataatttgac-ttatgttatcttttgttataaaaataa 298  Q
    |||||||||||||||||||||||| || |  ||||||| |||||||||||||||||||| ||||||    
T  58148 atgaaaacaacttatagcgtatattaatactatttgactttatgttatcttttgttatataaataa 58213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 210 - 289
Target Start/End: Original strand, 38047886 - 38047966
Alignment:
Q  210 tccataagctcttcaggattggtaatgaaaacaacttatagcgtatatgaaaataatttgac-ttatgttatcttttgtta 289  Q
    |||||||||||| |||||| | | ||||||||| | |||||  ||||||||||||||||||| |||| |||||||||||||    
T  38047886 tccataagctctccaggatagcttatgaaaacagcatatagtatatatgaaaataatttgactttattttatcttttgtta 38047966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 244 - 297
Target Start/End: Original strand, 4991008 - 4991062
Alignment:
Q  244 cttatagcgtatatgaaaataatttga-cttatgttatcttttgttataaaaata 297  Q
    |||||| | ||||||||||||| |||| |||||||||||||||||||||||||||    
T  4991008 cttataacttatatgaaaataaattgatcttatgttatcttttgttataaaaata 4991062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 207 - 269
Target Start/End: Original strand, 32408620 - 32408682
Alignment:
Q  207 atttccataagctcttcaggattggtaatgaaaacaacttatagcgtatatgaaaataatttg 269  Q
    |||||||||||||||||||||| | | ||||||| |  ||||||| |||||||||||||||||    
T  32408620 atttccataagctcttcaggatagcttatgaaaatagtttatagcttatatgaaaataatttg 32408682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 234 - 298
Target Start/End: Original strand, 39823176 - 39823241
Alignment:
Q  234 atgaaaacaacttatagcgtatatgaaaataatttgac-ttatgttatcttttgttataaaaataa 298  Q
    ||||||||||||| |||| ||||||||| || |||||| |||| ||||||||||||||| ||||||    
T  39823176 atgaaaacaacttgtagcttatatgaaagtagtttgactttattttatcttttgttatataaataa 39823241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 234 - 298
Target Start/End: Original strand, 18704091 - 18704155
Alignment:
Q  234 atgaaaacaacttatagcgtatatgaaaataatttgacttatgttatcttttgttataaaaataa 298  Q
    |||||||||||||||||| ||||| ||||||  |||||||   ||||||||||||||| ||||||    
T  18704091 atgaaaacaacttatagcttatataaaaatagcttgactttatttatcttttgttatagaaataa 18704155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 242 - 297
Target Start/End: Original strand, 35135725 - 35135781
Alignment:
Q  242 aacttatagcgtatatgaaaataatttgac-ttatgttatcttttgttataaaaata 297  Q
    |||||||||| |||||||||||| |||||| |||| ||||||||||||||| |||||    
T  35135725 aacttatagcttatatgaaaatagtttgactttattttatcttttgttatagaaata 35135781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 238 - 297
Target Start/End: Original strand, 42181151 - 42181211
Alignment:
Q  238 aaacaacttatagcgtatatgaaaataatttgac-ttatgttatcttttgttataaaaata 297  Q
    |||||||||||||| ||||||||||  ||||||| || | |||||||||||||||||||||    
T  42181151 aaacaacttatagcttatatgaaaaccatttgactttgttttatcttttgttataaaaata 42181211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 215 - 297
Target Start/End: Complemental strand, 14295540 - 14295457
Alignment:
Q  215 aagctcttcaggattggtaatgaaaacaacttatagcgtatatgaaaataatttgactt-atgttatcttttgttataaaaata 297  Q
    ||||||| |||||| | | | ||||||| |||||||| |||||||||| | |||||||| || ||||||||||||||| |||||    
T  14295540 aagctctccaggatagcttacgaaaacagcttatagcttatatgaaaacagtttgactttattttatcttttgttatagaaata 14295457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 234 - 273
Target Start/End: Complemental strand, 34205254 - 34205215
Alignment:
Q  234 atgaaaacaacttatagcgtatatgaaaataatttgactt 273  Q
    |||||||||||||||||| ||||| |||||||||||||||    
T  34205254 atgaaaacaacttatagcttatataaaaataatttgactt 34205215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 207 - 297
Target Start/End: Complemental strand, 34690915 - 34690825
Alignment:
Q  207 atttccataagctcttcaggattggtaatgaaaacaacttatagcgtatatgaaaataatttgac-ttatgttatcttttgttataaaaata 297  Q
    ||||||||||||||| || ||| | | |||| ||||||||||||| ||||||||| || | |||| |||| ||||||||||||||| |||||    
T  34690915 atttccataagctctccaagatggcttatgagaacaacttatagc-tatatgaaagtattgtgactttattttatcttttgttatagaaata 34690825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 234 - 297
Target Start/End: Complemental strand, 4855713 - 4855649
Alignment:
Q  234 atgaaaacaacttatagcgtatatgaaaataatttgac-ttatgttatcttttgttataaaaata 297  Q
    |||||||||||||||| | ||||||| || ||||| || |||| |||| ||||||||||||||||    
T  4855713 atgaaaacaacttataacttatatgataacaatttaactttattttattttttgttataaaaata 4855649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 234 - 293
Target Start/End: Complemental strand, 9634787 - 9634727
Alignment:
Q  234 atgaaaacaacttatagcgtatatgaaaataatttgacttatgtt-atcttttgttataaa 293  Q
    |||||||||||||||| | |||||||||||| || |||||  ||| |||||||||||||||    
T  9634787 atgaaaacaacttataacatatatgaaaatacttcgactttagttcatcttttgttataaa 9634727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 234 - 274
Target Start/End: Original strand, 10272486 - 10272526
Alignment:
Q  234 atgaaaacaacttatagcgtatatgaaaataatttgactta 274  Q
    |||||||||||||||||| |||| ||||| |||||||||||    
T  10272486 atgaaaacaacttatagcttatacgaaaacaatttgactta 10272526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 237 - 297
Target Start/End: Original strand, 16458037 - 16458097
Alignment:
Q  237 aaaacaacttatagcgtatatgaaaataatttgacttatgttatcttttgttataaaaata 297  Q
    ||||||||||||||| ||||  |||| ||||| | |||| |||||||||| ||||||||||    
T  16458037 aaaacaacttatagcatatacaaaaacaatttaagttattttatcttttgctataaaaata 16458097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 207 - 251
Target Start/End: Complemental strand, 29201575 - 29201531
Alignment:
Q  207 atttccataagctcttcaggattggtaatgaaaacaacttatagc 251  Q
    ||||||||||||||| |||||| ||| ||||||||| ||||||||    
T  29201575 atttccataagctctccaggataggttatgaaaacagcttatagc 29201531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 207 - 298
Target Start/End: Original strand, 37588388 - 37588480
Alignment:
Q  207 atttccataagctcttcaggattggtaatgaaaacaacttatagcgtatatgaaaataatttgactt-atgttatcttttgttataaaaataa 298  Q
    ||||||||||||||| ||| ||   | |||||||||||||||||| ||||||||||   ||||| || || ||||||||| ||||| ||||||    
T  37588388 atttccataagctctccagaataacttatgaaaacaacttatagcttatatgaaaactttttgatttgattttatcttttattatagaaataa 37588480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 207 - 297
Target Start/End: Complemental strand, 4558840 - 4558749
Alignment:
Q  207 atttccataagctcttcaggattggtaatgaaaacaacttatagcgtatatgaaaataatttgac-ttatgttatcttttgttataaaaata 297  Q
    |||||||||||||||  ||||| | | ||| ||||| |||||||| |||||||||||||||| || |||| ||||||||| ||||| |||||    
T  4558840 atttccataagctctctaggatagcttatggaaacagcttatagcatatatgaaaataatttaactttattttatcttttattatagaaata 4558749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 221 - 297
Target Start/End: Original strand, 1470898 - 1470975
Alignment:
Q  221 ttcaggattggtaatgaaaacaacttatagcgtatatgaaaataatttgac-ttatgttatcttttgttataaaaata 297  Q
    |||| ||| ||| ||||||||| |||||||| ||||||||| ||||||||| |||| ||||||||| ||||| |||||    
T  1470898 ttcatgataggttatgaaaacagcttatagcttatatgaaagtaatttgactttattttatcttttattatagaaata 1470975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 207 - 291
Target Start/End: Complemental strand, 34551162 - 34551077
Alignment:
Q  207 atttccataagctcttcaggattggtaatgaaaacaacttatagcgtatatgaaaataatttgactt-atgttatcttttgttata 291  Q
    |||| |||||||||| ||||||   | | |||||||||||||| | || ||||||| |||||||||| ||||||||||||||||||    
T  34551162 attttcataagctctccaggataacttaagaaaacaacttataacttaaatgaaaacaatttgacttgatgttatcttttgttata 34551077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 207 - 273
Target Start/End: Complemental strand, 29973123 - 29973057
Alignment:
Q  207 atttccataagctcttcaggattggtaatgaaaacaacttatagcgtatatgaaaataatttgactt 273  Q
    |||||||||| ||||  ||||| | | |||||||||||||||||| ||| |||||||| ||||||||    
T  29973123 atttccataaactctcaaggatagcttatgaaaacaacttatagcttatgtgaaaatagtttgactt 29973057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 234 - 287
Target Start/End: Complemental strand, 34770907 - 34770853
Alignment:
Q  234 atgaaaacaacttatagcgtatatgaaaataatttgac-ttatgttatcttttgt 287  Q
    |||||||||||||||||| || ||||||| |||||||| |||| |||||||||||    
T  34770907 atgaaaacaacttatagcttaaatgaaaacaatttgactttattttatcttttgt 34770853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 207 - 272
Target Start/End: Complemental strand, 7646020 - 7645955
Alignment:
Q  207 atttccataagctcttcaggattggtaatgaaaacaacttatagcgtatatgaaaataatttgact 272  Q
    ||||||||||||| | |||| | | | |||||||||||||||||| || ||||||| |||||||||    
T  7646020 atttccataagctttacaggttagcttatgaaaacaacttatagcttacatgaaaacaatttgact 7645955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 234 - 298
Target Start/End: Complemental strand, 38561741 - 38561676
Alignment:
Q  234 atgaaaacaacttatagcgtatatgaaaataatttgac-ttatgttatcttttgttataaaaataa 298  Q
    |||||||||||||||||  || || |||||| |||||| |||| ||||||||||||||| ||||||    
T  38561741 atgaaaacaacttatagtatagataaaaatagtttgactttattttatcttttgttatataaataa 38561676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 207 - 290
Target Start/End: Complemental strand, 2093321 - 2093237
Alignment:
Q  207 atttccataagctcttcaggattggtaatgaaaacaacttatagcgtatatgaaaataatttgac-ttatgttatcttttgttat 290  Q
    ||||| |||| | ||||||||| | |||||||||||||||||||| || | |||||  ||||||| |||| ||||||||| ||||    
T  2093321 atttctataaacgcttcaggatagctaatgaaaacaacttatagcttaaaagaaaaccatttgactttattttatcttttattat 2093237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 234 - 289
Target Start/End: Complemental strand, 24558868 - 24558812
Alignment:
Q  234 atgaaaacaacttatagcgtatatgaaaataatttgacttatg-ttatcttttgtta 289  Q
    |||||||||||||||||| |||| ||||||||||| ||||  | |||||||||||||    
T  24558868 atgaaaacaacttatagcttatacgaaaataatttaacttcggtttatcttttgtta 24558812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 234 - 297
Target Start/End: Complemental strand, 42597416 - 42597352
Alignment:
Q  234 atgaaaacaacttatagcgtatatgaaaataatttgac-ttatgttatcttttgttataaaaata 297  Q
    |||||||||||||||||| |  ||||||| ||||| || |||| ||||||||||||||| |||||    
T  42597416 atgaaaacaacttatagcttgcatgaaaacaattttactttattttatcttttgttatagaaata 42597352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 207 - 275
Target Start/End: Complemental strand, 43709315 - 43709247
Alignment:
Q  207 atttccataagctcttcaggattggtaatgaaaacaacttatagcgtatatgaaaataatttgacttat 275  Q
    |||| |||||||||| |||||| | | |||||||||||||||||| ||  ||||||  |||||||||||    
T  43709315 attttcataagctctccaggatagctcatgaaaacaacttatagcttacgtgaaaaccatttgacttat 43709247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 234 - 288
Target Start/End: Original strand, 32555036 - 32555091
Alignment:
Q  234 atgaaaacaacttatagcgtatatgaaaataatttgac-ttatgttatcttttgtt 288  Q
    |||||||||||||||||| |||| |||||||||||||| |||| ||||||||||||    
T  32555036 atgaaaacaacttatagcttataggaaaataatttgactttattttatcttttgtt 32555091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 232 - 290
Target Start/End: Original strand, 48364932 - 48364991
Alignment:
Q  232 taatgaaaacaacttatagcgtatatgaaaataatttgac-ttatgttatcttttgttat 290  Q
    ||||||||||||||||| ||||| ||||||| |||||||| |||| ||||||||||||||    
T  48364932 taatgaaaacaacttatggcgtaaatgaaaacaatttgactttattttatcttttgttat 48364991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 232 - 298
Target Start/End: Complemental strand, 48397663 - 48397596
Alignment:
Q  232 taatgaaaacaacttatagcgtatatgaaaataatttgac-ttatgttatcttttgttataaaaataa 298  Q
    |||||||||||||||||||| || || |||| |||||||| |||| ||||||||| ||||||||||||    
T  48397663 taatgaaaacaacttatagcttaaataaaaacaatttgactttattttatcttttattataaaaataa 48397596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 212 - 262
Target Start/End: Original strand, 20502101 - 20502151
Alignment:
Q  212 cataagctcttcaggattggtaatgaaaacaacttatagcgtatatgaaaa 262  Q
    ||||||||||||||||| | | ||||||||| |||||||||||||||||||    
T  20502101 cataagctcttcaggatagcttatgaaaacagcttatagcgtatatgaaaa 20502151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 234 - 298
Target Start/End: Original strand, 24235738 - 24235803
Alignment:
Q  234 atgaaaacaacttatagcgtatatgaaaataatttgac-ttatgttatcttttgttataaaaataa 298  Q
    |||||||||||||||||| |||||  ||||| |||||| |||| ||||||||||||||| ||||||    
T  24235738 atgaaaacaacttatagcttatattcaaatagtttgactttatattatcttttgttatagaaataa 24235803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 234 - 294
Target Start/End: Complemental strand, 37788875 - 37788814
Alignment:
Q  234 atgaaaacaacttatagcgtatatgaaaataatttgac-ttatgttatcttttgttataaaa 294  Q
    |||||||||||||||||  |||| |||||||||| ||| |||| ||||||||||||||||||    
T  37788875 atgaaaacaacttatagattatacgaaaataattggactttattttatcttttgttataaaa 37788814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 234 - 297
Target Start/End: Complemental strand, 1395686 - 1395622
Alignment:
Q  234 atgaaaacaacttatagcgtatatgaaaataatttgac-ttatgttatcttttgttataaaaata 297  Q
    |||||||||  | ||||| ||||||||||||||||||| |||| ||||||||||||||| |||||    
T  1395686 atgaaaacagttcatagcttatatgaaaataatttgactttattttatcttttgttatagaaata 1395622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 208 - 295
Target Start/End: Original strand, 33965518 - 33965608
Alignment:
Q  208 tttccataagctcttcaggattggtaatgaaaacaacttatagc--gtatatgaaaataatttgac-ttatgttatcttttgttataaaaa 295  Q
    ||||||||||||||||| ||| | | ||||||||| ||||||||   |||||||||| | |||||| |||| ||| |||||||||||||||    
T  33965518 tttccataagctcttcaagatagcttatgaaaacatcttatagcttttatatgaaaacagtttgactttattttaccttttgttataaaaa 33965608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 207 - 273
Target Start/End: Complemental strand, 23315668 - 23315602
Alignment:
Q  207 atttccataagctcttcaggattggtaatgaaaacaacttatagcgtatatgaaaataatttgactt 273  Q
    |||||||||||||||| || || | | ||| ||||| |||||||| |||||||||| ||||||||||    
T  23315668 atttccataagctctttagaatagcttatggaaacatcttatagcctatatgaaaacaatttgactt 23315602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 207 - 288
Target Start/End: Complemental strand, 27792914 - 27792832
Alignment:
Q  207 atttccataagctcttcaggattggtaatgaaaacaacttatagcgtatatgaaaataatttga-cttatgttatcttttgtt 288  Q
    ||||| ||||||||| || ||| | | |||||||||||||  ||| |||||||||||| ||||| ||||| ||||||||||||    
T  27792914 atttctataagctctacatgatagtttatgaaaacaacttgcagcttatatgaaaatagtttgaccttattttatcttttgtt 27792832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 234 - 298
Target Start/End: Original strand, 10101531 - 10101596
Alignment:
Q  234 atgaaaacaacttatagcgtatatgaaaataatttgac-ttatgttatcttttgttataaaaataa 298  Q
    ||||||||||||| || | |||||||||| ||||| || |||| ||||||||||||||| ||||||    
T  10101531 atgaaaacaacttttatcttatatgaaaacaatttaactttattttatcttttgttatagaaataa 10101596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 234 - 298
Target Start/End: Original strand, 10212456 - 10212521
Alignment:
Q  234 atgaaaacaacttatagcgtatatgaaaataatttgac-ttatgttatcttttgttataaaaataa 298  Q
    ||||||||||||| || | |||||||||| ||||| || |||| ||||||||||||||| ||||||    
T  10212456 atgaaaacaacttttatcttatatgaaaacaatttaactttattttatcttttgttatagaaataa 10212521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 234 - 298
Target Start/End: Complemental strand, 10357448 - 10357383
Alignment:
Q  234 atgaaaacaacttatagcgtatatgaaaataatttgac-ttatgttatcttttgttataaaaataa 298  Q
    ||||||||||||| || | |||||||||| ||||| || |||| ||||||||||||||| ||||||    
T  10357448 atgaaaacaacttgtatcttatatgaaaaaaatttaacattattttatcttttgttatagaaataa 10357383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 298
Target Start/End: Complemental strand, 20143920 - 20143875
Alignment:
Q  253 tatatgaaaataatttgacttatgttatcttttgttataaaaataa 298  Q
    |||||||||||| |||||||||| ||||||||| ||||| ||||||    
T  20143920 tatatgaaaatagtttgacttattttatcttttattatagaaataa 20143875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 298
Target Start/End: Original strand, 23269269 - 23269314
Alignment:
Q  253 tatatgaaaataatttgacttatgttatcttttgttataaaaataa 298  Q
    |||||||||||| |||||||||| ||||||||| ||||| ||||||    
T  23269269 tatatgaaaatagtttgacttattttatcttttattatagaaataa 23269314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 297
Target Start/End: Original strand, 37689450 - 37689503
Alignment:
Q  245 ttatagcgtatatgaaaataatttgac-ttatgttatcttttgttataaaaata 297  Q
    ||||||| |||||||||||||||| || |||  |||||||||||||||||||||    
T  37689450 ttatagcttatatgaaaataatttaactttactttatcttttgttataaaaata 37689503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 237 - 273
Target Start/End: Complemental strand, 28779368 - 28779332
Alignment:
Q  237 aaaacaacttatagcgtatatgaaaataatttgactt 273  Q
    ||||||||||||||| |||||||||||| ||||||||    
T  28779368 aaaacaacttatagcttatatgaaaatagtttgactt 28779332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 234 - 297
Target Start/End: Original strand, 43116483 - 43116547
Alignment:
Q  234 atgaaaacaacttatagcgtatatgaaaataatttgactt-atgttatcttttgttataaaaata 297  Q
    |||||||| ||||||||| |||||||||||  ||||| || || ||||||||||||||| |||||    
T  43116483 atgaaaacgacttatagcttatatgaaaattgtttgatttgattttatcttttgttatagaaata 43116547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 234 - 274
Target Start/End: Complemental strand, 48807723 - 48807683
Alignment:
Q  234 atgaaaacaacttatagcgtatatgaaaataatttgactta 274  Q
    |||||||||||||||||| | |||||||||| |||||||||    
T  48807723 atgaaaacaacttatagcttctatgaaaatagtttgactta 48807683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 234 - 288
Target Start/End: Complemental strand, 11513913 - 11513858
Alignment:
Q  234 atgaaaacaacttatagcgtatatgaaaataatttgac-ttatgttatcttttgtt 288  Q
    |||||||||||||||||| |||||||||| |||||||| |||| ||||||||||||    
T  11513913 atgaaaacaacttatagcttatatgaaaacaatttgactttattttatcttttgtt 11513858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 207 - 273
Target Start/End: Complemental strand, 43141913 - 43141847
Alignment:
Q  207 atttccataagctcttcaggattggtaatgaaaacaacttatagcgtatatgaaaataatttgactt 273  Q
    |||||||||| ||||||||||| | | ||||||||| |||||||| |||||| ||| ||||||||||    
T  43141913 atttccataaactcttcaggatagcttatgaaaacatcttatagcttatatggaaacaatttgactt 43141847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 234 - 297
Target Start/End: Original strand, 17952756 - 17952820
Alignment:
Q  234 atgaaaacaacttatagcgtatatgaaaataatttgac-ttatgttatcttttgttataaaaata 297  Q
    ||||||||| ||| |||| |||||||||||| |||||| |||| ||||||||||||||| |||||    
T  17952756 atgaaaacatcttgtagcttatatgaaaatagtttgactttattttatcttttgttatagaaata 17952820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 207 - 298
Target Start/End: Original strand, 22681213 - 22681305
Alignment:
Q  207 atttccataagctcttcaggattggtaatgaaaacaacttatagcgtatatgaaaataatttgac-ttatgttatcttttgttataaaaataa 298  Q
    ||||||||||| |||  ||||| | | ||||||||| |||||||| |||||||||| |||||| | || | |||||||||||| |||||||||    
T  22681213 atttccataagttctctaggatagattatgaaaacagcttatagcttatatgaaaacaatttggctttgttttatcttttgttttaaaaataa 22681305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 207 - 291
Target Start/End: Original strand, 43635129 - 43635213
Alignment:
Q  207 atttccataagctcttcaggattggtaatgaaaacaacttatagcgtatatgaaaataatttgacttatgttatcttttgttata 291  Q
    |||| |||||||| |||| ||| | | |||| ||||||||||||||||||| |||||| || ||||||| || ||||||| ||||    
T  43635129 attttcataagcttttcatgatagcttatgagaacaacttatagcgtatataaaaatatttagacttattttctcttttgatata 43635213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 239 - 297
Target Start/End: Original strand, 31740019 - 31740078
Alignment:
Q  239 aacaacttatagcgtatatgaaaataatttgac-ttatgttatcttttgttataaaaata 297  Q
    ||||||||||||| |||||||||||| |||||| |||| |||||||| |||||| |||||    
T  31740019 aacaacttatagcttatatgaaaatagtttgactttattttatctttagttatagaaata 31740078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 241 - 298
Target Start/End: Original strand, 3423830 - 3423888
Alignment:
Q  241 caacttatagcgtatatgaaaataatttgac-ttatgttatcttttgttataaaaataa 298  Q
    ||||||||||  ||||||||||||||||||| |||| |||||||||| || ||||||||    
T  3423830 caacttataggttatatgaaaataatttgactttattttatcttttggtacaaaaataa 3423888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 234 - 287
Target Start/End: Original strand, 6993779 - 6993833
Alignment:
Q  234 atgaaaacaacttatagcgtatatgaaaataatttga-cttatgttatcttttgt 287  Q
    ||||||||||| |||||| |||||||| ||||||||| ||||| |||||||||||    
T  6993779 atgaaaacaacctatagcttatatgaatataatttgaccttattttatcttttgt 6993833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 209 - 298
Target Start/End: Complemental strand, 43199454 - 43199364
Alignment:
Q  209 ttccataagctcttcaggattggtaatgaaaacaacttatagcgtatatgaaaataatttgac-ttatgttatcttttgttataaaaataa 298  Q
    |||| |||||| | |||||| | | |||||||||||||||||| |||| ||| ||||||| || |||| |||||||||||| || ||||||    
T  43199454 ttccttaagctgtccaggatagtttatgaaaacaacttatagcttatacgaagataatttaactttattttatcttttgttgtagaaataa 43199364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 207 - 291
Target Start/End: Complemental strand, 6988157 - 6988072
Alignment:
Q  207 atttccataagctcttcaggattggtaatgaaaacaacttatagcgtatatgaaaataatttgac-ttatgttatcttttgttata 291  Q
    ||||| |||| ||||||| ||| | | |||||||||||||||| |   || |||||||||||||| |||| |||||||||||||||    
T  6988157 atttctataaactcttcaagatagcttatgaaaacaacttataactagtaagaaaataatttgactttattttatcttttgttata 6988072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 297
Target Start/End: Original strand, 9878736 - 9878801
Alignment:
Q  233 aatgaaaacaacttatagcgtatatgaaaataatttga-cttatgttatcttttgttataaaaata 297  Q
    ||||||||||||||||||| ||| | |||||| |||||  |||| ||||||||||||||| |||||    
T  9878736 aatgaaaacaacttatagcatatgtaaaaatagtttgagtttattttatcttttgttatagaaata 9878801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 234 - 298
Target Start/End: Complemental strand, 10143187 - 10143122
Alignment:
Q  234 atgaaaacaacttatagcgtatatgaaaataatttgactta-tgttatcttttgttataaaaataa 298  Q
    ||||||| |||||||||| ||||| |||| | ||||||||| | ||||||||||||||| ||||||    
T  10143187 atgaaaaaaacttatagcttatataaaaacagtttgacttaattttatcttttgttatagaaataa 10143122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 297
Target Start/End: Complemental strand, 25609808 - 25609747
Alignment:
Q  237 aaaacaacttatagcgtatatgaaaataatttgac-ttatgttatcttttgttataaaaata 297  Q
    ||||||||||||||| |||| |||||||| ||||| |||| ||||||||| ||||| |||||    
T  25609808 aaaacaacttatagcttatacgaaaataaattgactttattttatcttttcttatagaaata 25609747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 290
Target Start/End: Original strand, 28803537 - 28803618
Alignment:
Q  210 tccataagctcttcaggattggtaatgaaaacaacttatagcgtatatgaaaataatttgac-ttatgttatcttttgttat 290  Q
    |||||||||||| |||||| | | | ||||||||||| |||| |||||||||  | |||||| |||| ||||||||||||||    
T  28803537 tccataagctctccaggatagtttaagaaaacaacttgtagcttatatgaaatcagtttgactttattttatcttttgttat 28803618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 207 - 268
Target Start/End: Complemental strand, 39983384 - 39983323
Alignment:
Q  207 atttccataagctcttcaggattggtaatgaaaacaacttatagcgtatatgaaaataattt 268  Q
    |||| ||| |||||| |||||| | | |||||||||||||||||| ||||||||||| ||||    
T  39983384 attttcattagctctccaggatagcttatgaaaacaacttatagcttatatgaaaattattt 39983323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 234 - 297
Target Start/End: Original strand, 23143033 - 23143097
Alignment:
Q  234 atgaaaacaacttatagcgtatatgaaaataatttgactt-atgttatcttttgttataaaaata 297  Q
    |||||||||||| ||||| |||| ||||| ||||||| || || ||||||||||||| |||||||    
T  23143033 atgaaaacaactaatagcttataagaaaacaatttgatttgattttatcttttgttacaaaaata 23143097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 234 - 297
Target Start/End: Original strand, 23554823 - 23554887
Alignment:
Q  234 atgaaaacaacttatagcgtatatgaaaataatttgactt-atgttatcttttgttataaaaata 297  Q
    |||||||||||| ||||| |||| ||||| ||||||| || || ||||||||||||| |||||||    
T  23554823 atgaaaacaactaatagcttataagaaaacaatttgatttgattttatcttttgttacaaaaata 23554887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 234 - 297
Target Start/End: Complemental strand, 28933839 - 28933775
Alignment:
Q  234 atgaaaacaacttatagcgtatatgaaaataatttgactt-atgttatcttttgttataaaaata 297  Q
    |||||||||| ||||| | || ||||||||||||||| || || ||||||||||||||| |||||    
T  28933839 atgaaaacaatttataacttaaatgaaaataatttgatttgattttatcttttgttatataaata 28933775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 233 - 273
Target Start/End: Complemental strand, 33944621 - 33944581
Alignment:
Q  233 aatgaaaacaacttatagcgtatatgaaaataatttgactt 273  Q
    ||||||||||| ||||||| |||||||||| ||||||||||    
T  33944621 aatgaaaacaatttatagcttatatgaaaacaatttgactt 33944581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0549 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0549
Description:

Target: scaffold0549; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 234 - 291
Target Start/End: Original strand, 1779 - 1837
Alignment:
Q  234 atgaaaacaacttatagcgtatatgaaaataatttgac-ttatgttatcttttgttata 291  Q
    |||||| ||||||||||||||||||||||||| || || |||| |||||||||||||||    
T  1779 atgaaaccaacttatagcgtatatgaaaataaattaactttattttatcttttgttata 1837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0549; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 234 - 291
Target Start/End: Original strand, 3869 - 3927
Alignment:
Q  234 atgaaaacaacttatagcgtatatgaaaataatttgac-ttatgttatcttttgttata 291  Q
    |||||| ||||||||||||||||||||||||| || || |||| |||||||||||||||    
T  3869 atgaaaccaacttatagcgtatatgaaaataaattaactttattttatcttttgttata 3927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 234 - 291
Target Start/End: Original strand, 11340680 - 11340738
Alignment:
Q  234 atgaaaacaacttatagcgtatatgaaaataatttgac-ttatgttatcttttgttata 291  Q
    |||||| ||||||||||||||||||||||||| || || |||| |||||||||||||||    
T  11340680 atgaaaccaacttatagcgtatatgaaaataaattaactttattttatcttttgttata 11340738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 208 - 297
Target Start/End: Original strand, 28660789 - 28660879
Alignment:
Q  208 tttccataagctcttcaggattggtaatgaaaacaacttatagcgtatatgaaaataatttgac-ttatgttatcttttgttataaaaata 297  Q
    |||||||||||| || ||||| | | |||||||||| |||||   |||||||||||||||| || |||| |||||| ||||||||||||||    
T  28660789 tttccataagcttttaaggatagtttatgaaaacaatttataatttatatgaaaataatttaactttattttatctattgttataaaaata 28660879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 234 - 297
Target Start/End: Complemental strand, 1403011 - 1402947
Alignment:
Q  234 atgaaaacaacttatagcgtatatgaaaataatttgac-ttatgttatcttttgttataaaaata 297  Q
    |||||||||| ||||||| |||||||||||| ||| || |||| ||||||||||||||| |||||    
T  1403011 atgaaaacaatttatagcttatatgaaaatagtttaactttattttatcttttgttatagaaata 1402947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 234 - 297
Target Start/End: Original strand, 2027461 - 2027525
Alignment:
Q  234 atgaaaacaacttatagcgtatatgaaaataatttgactt-atgttatcttttgttataaaaata 297  Q
    |||| |||| |||||||  |||||||||||| |||||||| || |||||||||||||||||||||    
T  2027461 atgagaacagcttataggttatatgaaaatagtttgactttattttatcttttgttataaaaata 2027525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 234 - 297
Target Start/End: Complemental strand, 4006729 - 4006665
Alignment:
Q  234 atgaaaacaacttatagcgtatatgaaaataatttgac-ttatgttatcttttgttataaaaata 297  Q
    |||||||||||||||||| ||||| |||| |||||||| |||| ||||| ||||||||| |||||    
T  4006729 atgaaaacaacttatagcttatataaaaacaatttgactttattttatcatttgttatagaaata 4006665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 234 - 297
Target Start/End: Original strand, 9668040 - 9668104
Alignment:
Q  234 atgaaaacaacttatagcgtatatgaaaataatttgact-tatgttatcttttgttataaaaata 297  Q
    |||||||||| || |||| |||||||||| |||| |||| ||||||||||||||||||| |||||    
T  9668040 atgaaaacaaattgtagcttatatgaaaacaattcgactctatgttatcttttgttatacaaata 9668104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 207 - 285
Target Start/End: Original strand, 32386591 - 32386670
Alignment:
Q  207 atttccataagctcttcaggattggtaatgaaaacaacttatagcgtatatgaaaataatttga-cttatgttatctttt 285  Q
    |||| |||||||||| ||||||   ||||||||||||| |||| | |||||||||| ||||||| ||||| |||||||||    
T  32386591 attttcataagctctccaggataactaatgaaaacaacgtataccttatatgaaaacaatttgaccttattttatctttt 32386670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 207 - 291
Target Start/End: Original strand, 281876 - 281961
Alignment:
Q  207 atttccataagctcttcaggattggtaatgaaaacaacttatagcgtatatgaaaataatttgactt-atgttatcttttgttata 291  Q
    |||||||| ||||||  ||||| | | ||||| ||| |||||||| |||||||||| || ||||||| || |||||||||||||||    
T  281876 atttccatgagctctctaggatagcttatgaacacagcttatagcttatatgaaaacaagttgactttattttatcttttgttata 281961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 207 - 291
Target Start/End: Original strand, 27595595 - 27595680
Alignment:
Q  207 atttccataagctcttcaggattggtaatgaaaacaacttatagcgtatatgaaaataatttgac-ttatgttatcttttgttata 291  Q
    |||||| ||| ||||  |||||||  |||||||  |||||| ||| ||||||||||||||||||| |||| ||||||||| |||||    
T  27595595 atttccgtaaactctctaggattgcaaatgaaattaacttacagcttatatgaaaataatttgactttattttatcttttattata 27595680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 238 - 297
Target Start/End: Original strand, 10452419 - 10452479
Alignment:
Q  238 aaacaacttatagcgtatatgaaaataatttga-cttatgttatcttttgttataaaaata 297  Q
    |||||||||||||| |||||||||||| |||||  |||| |||| |||||||||| |||||    
T  10452419 aaacaacttatagcttatatgaaaatagtttgattttattttatattttgttatagaaata 10452479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 234 - 298
Target Start/End: Complemental strand, 27591 - 27526
Alignment:
Q  234 atgaaaacaacttatagcgtatatgaaaataatttgac-ttatgttatcttttgttataaaaataa 298  Q
    |||||||||||||||||  |||||||||| |||||||| |||| ||||||| ||||||| ||||||    
T  27591 atgaaaacaacttatagtttatatgaaaacaatttgactttattttatcttctgttatagaaataa 27526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University