View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16714_low_14 (Length: 487)
Name: NF16714_low_14
Description: NF16714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16714_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 452; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 13 - 472
Target Start/End: Complemental strand, 44199354 - 44198895
Alignment:
| Q |
13 |
gaagaaggaggatatgcgagcgaggccatagcccgaaacaccatctggggaacgaatggctttgagtttttggtgagagggaagggtgaagagagtttgt |
112 |
Q |
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| T |
44199354 |
gaagaaggaggatatgcgagcgaggccatagcccgaaacaccatctggggaacgaatggctttgagtttttggtgagagggaagggtgaagagagtttgt |
44199255 |
T |
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| Q |
113 |
ccaagccattgaatttcatcaaggaggcttattgggatgccatggttcaccacttgatacacaccccatgttttgcatgcatgtcctattaactttgaag |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44199254 |
ccaagccattgaatttcatcaaggaggcttattgggatgccatggttcaccacttgatacacaccccatgttttgcatgcatgtcctattaactttgaag |
44199155 |
T |
|
| Q |
213 |
catttgggtcattgagatcaataacgggaacaatactactagtagtaccctccttaataagggtgtgatcatcaaggtggttccaagtgtaagattcagg |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44199154 |
catttgggtcattgagatcaataacgggaacaatactactagtagtaccctccttaataagggtgtgatcatcaaggtggttccaagtgtaagattcagg |
44199055 |
T |
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| Q |
313 |
aagttcttgtagtgaattgaaatcagggtgcttgtggttaacatgcacagggtgagctctataagcttctgagagtgaaggcatattgaatagtgtgcaa |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |
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| T |
44199054 |
aagttcttgtagtgaattgaaatcagggtgcttgtggttaacatgcacagggtgagctctgtaggcttctgagagtgaaggcatattgaatagtgtgcaa |
44198955 |
T |
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| Q |
413 |
gaaaggttttaaatagtgaatatatgtactaactaggaatatggtgttgttggtactttg |
472 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44198954 |
gaaaggttttaaatagtgaatatatgtactaactaggaatatggtgttgttggtactttg |
44198895 |
T |
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