View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16714_low_16 (Length: 466)
Name: NF16714_low_16
Description: NF16714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16714_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 401; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 1 - 448
Target Start/End: Original strand, 43218835 - 43219275
Alignment:
| Q |
1 |
actccgtgacaacttagtaacatagacactaaaaggagaatcaaatgcgcgtgggcgttttgggagatcaggtagtgtatttcttatatcatccttacta |
100 |
Q |
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| T |
43218835 |
actccgtgacaacttagtaacatagacactaaaaggagaatcaaatgcgtgtgggcgttttgggagatcaggtagtgtatttcttatatcatccttacta |
43218934 |
T |
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| Q |
101 |
acagtcaagaaatttccagctaattcctgtcacacaaaggatgaattagttaatcacattcattctaagtgttgaatcaatcccacactacaaaaatata |
200 |
Q |
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| T |
43218935 |
acagtcaagaaatttccagctaattcctgtcacacaaaggatgaattagttaatcacattcattctaagtgttgaatcaatcccacactacaaaaatata |
43219034 |
T |
|
| Q |
201 |
aacaggaaaacttacatagccattgaacttcttcataggcttctcaacttcttcaacggtactcatggttacacatccaaattaaacatttcatattggt |
300 |
Q |
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| T |
43219035 |
aaccggaaaacttacatagccattgaacttcttcatagccttctcaacttcttcaacggtactcatggttacacatcc-----aaacatttcatattggt |
43219129 |
T |
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| Q |
301 |
tccaagtataaattacctgaaatcattttattagggaatttacctgaaaacattttgtattgcttcaattaatttatttgtcatggatgttaatttatgc |
400 |
Q |
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| T |
43219130 |
tccaagtataaattacctgaaatcattttattagggaatttacctgaaaacattttgtattgcgtcaattaatttatttgtcatggatgttaatttatgc |
43219229 |
T |
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| Q |
401 |
tatagactttatcattttattagggaatgcatatatactaatgtgatt |
448 |
Q |
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| T |
43219230 |
tatagactttatcattttattagggaatgc--atatactaatgtgatt |
43219275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 93 - 149
Target Start/End: Original strand, 43222412 - 43222468
Alignment:
| Q |
93 |
ccttactaacagtcaagaaatttccagctaattcctgtcacacaaaggatgaattag |
149 |
Q |
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| T |
43222412 |
ccttattaactgtcaacaatcttccatctaattcctgtcacacaaagggtgaattag |
43222468 |
T |
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