View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16714_low_17 (Length: 462)
Name: NF16714_low_17
Description: NF16714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16714_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 196 - 454
Target Start/End: Original strand, 18959052 - 18959308
Alignment:
| Q |
196 |
ctagatattattgtgcatttgtggtaaatttagcgtctaattttgtttacacataaaaacgtcttacactataacaatctgagtctccaagagtgcatcg |
295 |
Q |
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| T |
18959052 |
ctagatattattgtgcatttgtggtaaatttagcgtctaattttgtttacacataaaaatgtcttacactataacaatctgagtctccaagagtgcatcg |
18959151 |
T |
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| Q |
296 |
tcaacactatacttgttctgagttgacactatgactattttttgtacaaatagtgatagtcgataagttaactgatagtgaataaattcatgaaaatgca |
395 |
Q |
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| T |
18959152 |
tcaacactatacttgttctgagttgacactatgactattttttgtacaaatagtgatagtcgataagttaactgatagttaataaattcatgaaaatgca |
18959251 |
T |
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| Q |
396 |
tttatacatacggtgttaactttcatctatgtcttcgtgtcggaagtgccctctgtgct |
454 |
Q |
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| T |
18959252 |
tttatac--acggtgttaactttcatctatgtcttcgtgtcggaagtgccctttgtgct |
18959308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 23 - 159
Target Start/End: Original strand, 18958879 - 18959015
Alignment:
| Q |
23 |
gacattggttccgattttaaagcagccaccgtaagagccaccgttgttcaggcctccaccatctactatgacacacctgccactttaggtgcttttactt |
122 |
Q |
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| T |
18958879 |
gacattggttccgattttaaagcagtcaccgtaagagccaccgttgttcaggcctccaccatctactatgacacacctgccactttaggtgcttttactt |
18958978 |
T |
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| Q |
123 |
ccccactttgcttcattaaacacagtggttatcattc |
159 |
Q |
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| T |
18958979 |
ccccactttgattcattaaacacaatggttatcattc |
18959015 |
T |
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