View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16714_low_18 (Length: 457)
Name: NF16714_low_18
Description: NF16714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16714_low_18 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 9 - 457
Target Start/End: Original strand, 20668732 - 20669180
Alignment:
| Q |
9 |
aacacagaatctaaccacatcagcagcatcctctcatcacatgtatcatagctcaaccaatcaaatgcatacattggattacgcatctttaatctaaacc |
108 |
Q |
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| T |
20668732 |
aacacagaatctaaccacatcagcagcatcctctcatcacatgtatcatagatcaaccaatcaaatgcatacattggattacacatctttaatctaaacc |
20668831 |
T |
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| Q |
109 |
aatcaaacaccatgatcatgaatctgacgtggcatgtctacatccactaaccatgcatcatatagtaactacctctctatctttcatattgtgaattcag |
208 |
Q |
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| T |
20668832 |
aatcaatgaccatgatcatgaatctgacgtggcatgtctacatccactaaccatgcatcatatagtaactacctctctatctttcatattgtgaattcag |
20668931 |
T |
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| Q |
209 |
caacacattaattcatcaaagtttagtttgagttgaagattcctaaaaccaaccatggcttccattgctgcttctactgcagctgcttcacttggaatgt |
308 |
Q |
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| T |
20668932 |
caacaaattaattcatcaaagcttagtttgagttgaagattcctaaaaccaaccatggcttccattgctgcttctactgcagctgcttcacttggaatgt |
20669031 |
T |
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| Q |
309 |
ctgaaatgcttggaaatccagttaaattcagtggtgcaactaggtctattccttcatcttcaactccatctaccttcaaaactgttgctcttttctccag |
408 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20669032 |
ctgaaatgcttggaaatccagttaaattcagtggtgcaactaggtctgttccttcatcttcaactccatctaccttcaaaactgttgctcttttctccag |
20669131 |
T |
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| Q |
409 |
gaagaaagcagcacctccaccaaagcagaaagtggttactccggccagc |
457 |
Q |
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| T |
20669132 |
gaagaaagcagcacctccaccaaagcagaaagtggctactccggccagc |
20669180 |
T |
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