View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16714_low_19 (Length: 452)
Name: NF16714_low_19
Description: NF16714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16714_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 16 - 444
Target Start/End: Complemental strand, 13472731 - 13472305
Alignment:
| Q |
16 |
ttagggactgtgttataggttttaccgttcaagtatgcactattttaaatcaaggcttaatnnnnnnngtttgttgtaagaaacgatttgtaaaataagt |
115 |
Q |
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| T |
13472731 |
ttagggactgtgttataggttttaccgttcaagtatgcactattttaaatcaaggcttaataaaaaaagtttgttgtaagaaacgatttgtaaaataagt |
13472632 |
T |
|
| Q |
116 |
tgcaaagaatagaaagattgtgctgagattagacgtcggctatttattcaacgcatcctcttagattgattgtatattttctaagatttaaatatgtctc |
215 |
Q |
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| T |
13472631 |
tgcaatgaatagaaagattgtgctgagattagacgtcggctatttattcaacgcatcctcttagattgattgtatattttctaagatttaaatatgtctc |
13472532 |
T |
|
| Q |
216 |
cacctatctcttattgtatgtttccatgtaaacgacgtaaaatccgctgtattgattcatggcggacccaaagcaagtgcaaccaggccaattgtggtct |
315 |
Q |
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| T |
13472531 |
cacctatctcttattgtatgtttccatgtaaacgacgtaaaatccgctgtatcgattcatggcggacccaaagcaagtgcaaccaggccaattgtggtct |
13472432 |
T |
|
| Q |
316 |
caaaaaatgttggggactcaattatttatttattttgaaatcctaactaactgaacttaatcctagcacatagagagaattaattatccgtagaggatgt |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||| |
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| T |
13472431 |
caaaaaatgttggggactcaattatttatttattttgaaatcctaactaactgaacttaatcct--cacaaagagagaattaattacccgtagaggatgt |
13472334 |
T |
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| Q |
416 |
aactaacaaagatataaagattgatgatg |
444 |
Q |
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| T |
13472333 |
aactaacaaagatataaagattgatgatg |
13472305 |
T |
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