View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16714_low_2 (Length: 818)
Name: NF16714_low_2
Description: NF16714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16714_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 601; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 601; E-Value: 0
Query Start/End: Original strand, 1 - 709
Target Start/End: Complemental strand, 48527683 - 48526974
Alignment:
| Q |
1 |
tatgaaatagttttagttgaagctttacgcgaacaatatgacagtcgagctctatgtgtttggttctctccaggaaggatgaattggcagcaatatgtct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48527683 |
tatgaaatagttttagttgaagctttacgcgaacaatatgacagtcgagctctatgtgtttggttctctccaggaaggatgaattggcagcaatatgtct |
48527584 |
T |
|
| Q |
101 |
tgcggcagattgattgtcacagtataacatggctggtttgatgaaagtaaatttgaggtcattgagaagatatgttaaccatttgatctcacaaattgtt |
200 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48527583 |
tgcggcggattgattgtcacagtataacatggctggtttgatgaaagtaaatttgaggtcattgagaagatatgttaaccatttgatctcacaaattgtt |
48527484 |
T |
|
| Q |
201 |
gattatatggatcgatagattttgaaattgtaccnnnnnnnnnnaagatttccaacatatgagtgagtcgcctaagaagatgcaaaaataactgattgat |
300 |
Q |
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| T |
48527483 |
gattatatggatcgatagattttgaaattgtaccttttttttttaagatttccagcatatgagtgagtcgcctaagaagatgcaaaaataactgattgat |
48527384 |
T |
|
| Q |
301 |
tttcaagtgtctaggcagcttgatcaatct-----gagtcacaaaatgctttgatctgaatctaagatggaaaaaatattatatttattgtgatggagag |
395 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
48527383 |
tttcaagtgtctaggcagcttgatcaatctaatctgagtcacaaaatgctttgatctgaatctaagatggaaaaaatattc-----attgtgatggagag |
48527289 |
T |
|
| Q |
396 |
atttttaggtatagtatttgaatggctgcttgtagatgttgtgctgtactctgatggaacttttttgattaaatactctatcctaagagaccctttatca |
495 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
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| T |
48527288 |
atttttaggtatagtatttgaatggctgcttgtggatgttgtgctgtactctgatggaacttttttgcttcaatactctatcctaagagaccctttatca |
48527189 |
T |
|
| Q |
496 |
gtatctgctcttaactctaatatatttttcttgcttaaactcagatactttatcctaattaagtgactctttatcagtacttgctcttatctttgatgga |
595 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48527188 |
gtatttgctcttaactctaatatatttttcttgcttaaactcagatactttatcctaattaagtgactctttatcagtacttgctcttatctttgatgga |
48527089 |
T |
|
| Q |
596 |
attttcttgcttaaattttagatactccatcctaagtgacgcttaatccaaaaccctcatcaca-tgatctctcaaacaaattcctcaacggttcattac |
694 |
Q |
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|||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
48527088 |
attttcttgcttaaatttcagatactccatcctaagtgacccttaatccaaaaccctcatcacattgatctctcaaacaaattcctcaacggttcattac |
48526989 |
T |
|
| Q |
695 |
aaaaactctatcttc |
709 |
Q |
| |
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||||||||||||||| |
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| T |
48526988 |
aaaaactctatcttc |
48526974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 709 - 802
Target Start/End: Complemental strand, 48526949 - 48526856
Alignment:
| Q |
709 |
ccaacggcatctcaggtaaactacctaacttgattggtttatcaataaaccttcaaattttcaacatttccacaagtccactatatcacacata |
802 |
Q |
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||||| |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48526949 |
ccaaccgcatctcaggtaaactacttgacttgattggtttatcaataaaccttcaaattttcaacatttccacaagtccactatatcacacata |
48526856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 639 - 694
Target Start/End: Original strand, 48764498 - 48764554
Alignment:
| Q |
639 |
taatccaaaaccctcatcaca-tgatctctcaaacaaattcctcaacggttcattac |
694 |
Q |
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|||||||||||| |||||||| |||||||||| |||| |||||||| |||||||||| |
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| T |
48764498 |
taatccaaaaccttcatcacattgatctctcagacaatttcctcaatggttcattac |
48764554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 589 - 635
Target Start/End: Original strand, 48764283 - 48764328
Alignment:
| Q |
589 |
tgatggaattttcttgcttaaattttagatactccatcctaagtgac |
635 |
Q |
| |
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|||||||||||||||||||||| || |||||||||||||| |||||| |
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| T |
48764283 |
tgatggaattttcttgcttaaa-ttcagatactccatcctcagtgac |
48764328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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