View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16714_low_20 (Length: 426)

Name: NF16714_low_20
Description: NF16714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16714_low_20
NF16714_low_20
[»] chr7 (16 HSPs)
chr7 (22-397)||(29275185-29275560)
chr7 (149-397)||(29279015-29279266)
chr7 (149-257)||(29269758-29269866)
chr7 (22-129)||(28612160-28612267)
chr7 (25-134)||(29270587-29270696)
chr7 (45-134)||(29288411-29288500)
chr7 (145-211)||(28612975-28613041)
chr7 (45-134)||(29282972-29283061)
chr7 (151-219)||(28621251-28621319)
chr7 (145-219)||(28614653-28614726)
chr7 (45-105)||(28623328-28623388)
chr7 (149-258)||(29282136-29282245)
chr7 (149-219)||(29287629-29287699)
chr7 (178-242)||(29286976-29287040)
chr7 (52-129)||(28615439-28615516)
chr7 (352-397)||(29286897-29286942)
[»] chr1 (3 HSPs)
chr1 (149-219)||(49149566-49149636)
chr1 (149-241)||(4235404-4235496)
chr1 (145-241)||(49144997-49145093)


Alignment Details
Target: chr7 (Bit Score: 348; Significance: 0; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 22 - 397
Target Start/End: Complemental strand, 29275560 - 29275185
Alignment:
Q  22 tggcacagaaattgaatcgctagttccaacaaataaaatgttgttttccaaactctcaagtttgttgatttgttcaacttttccgctctgggcgtccagt 121  Q
    ||||||||||||| ||| || |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  29275560 tggcacagaaattaaattgccagttccaacaaataaaatgttgctttccaaactctcaagtttgttgatttgttcaactttttcgctctgggcgtccagt 29275461  T
Q  122 tccaatttcaaaagaaaccaagtcaagtcttgcacaccacacgaaacctaacatgatctatgtgttcttccaacttatcaagaaccaaactaagaggaga 221  Q
    |||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29275460 tccaatttgaaaagaaaccaagtcaagtcttgcacactacacgaaacctaacatgatctatgtgttcttccaacttatcaagaaccaaactaagaggaga 29275361  T
Q  222 ggattctaaattttcccaatcaaccttcctcattgctgataagtaaaactaaccggtgaaataattgaagggagtgttaggaaagttactcaatgtagaa 321  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29275360 ggattctaaattttcccaatcaaccttcctcattgctgataagtaaaactaaccggtgaaataattgaagggagtgttaggaaagttactcaatgtagaa 29275261  T
Q  322 aactccaccgtaaataccttacctgcataatatagacagaaactccatttaaatatttttattggcttaagtactt 397  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29275260 aactccaccgtaaataccttacctgcataatatagacagaaactccatttaaatatttttattggcttaagtactt 29275185  T

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Target: chr7; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 149 - 397
Target Start/End: Complemental strand, 29279266 - 29279015
Alignment:
Q  149 tcttgcacaccacacgaaacctaacatgatctatgtgttcttccaacttatcaagaaccaaactaagaggagaggattctaaattttcccaatcaacctt 248  Q
    |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| | | ||||||||||||||||||||||||    
T  29279266 tcttacacaccacaccaaacctaacatgatctatgtgttcttccaacttatcaagaacaaaactaagaggatatgcttctaaattttcccaatcaacctt 29279167  T
Q  249 cctcattgctgataagtaaaactaaccggtgaaataattgaagggagtgtt---aggaaagttactcaatgtagaaa-actccaccgtaaataccttacc 344  Q
    ||||||   ||||||||||||||||| |||||||||||| |||||||||||   ||||| ||||||| |  || |||  |||||||||||||||||||||    
T  29279166 cctcat---tgataagtaaaactaacaggtgaaataattaaagggagtgtttggaggaacgttactccaattacaaactctccaccgtaaataccttacc 29279070  T
Q  345 tgcataa--tatagacagaaactccatttaaatatttttattggcttaagtactt 397  Q
    |||||||  |||||||||||||||||||||||||||||| ||||| |||||||||    
T  29279069 tgcataatgtatagacagaaactccatttaaatatttttcttggcgtaagtactt 29279015  T

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Target: chr7; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 149 - 257
Target Start/End: Complemental strand, 29269866 - 29269758
Alignment:
Q  149 tcttgcacaccacacgaaacctaacatgatctatgtgttcttccaacttatcaagaaccaaactaagaggagaggattctaaattttcccaatcaacctt 248  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||  ||||||||||||||||||||  || | |||||||||  |||||| |||||    
T  29269866 tcttgcacaccacaccaaacctaacatgatctatgtgttcttccaactcgtcaagaaccaaactaagagggtagcaatctaaatttgaccaatctacctt 29269767  T
Q  249 cctcattgc 257  Q
     ||||||||    
T  29269766 tctcattgc 29269758  T

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Target: chr7; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 22 - 129
Target Start/End: Original strand, 28612160 - 28612267
Alignment:
Q  22 tggcacagaaattgaatcgctagttccaacaaataaaatgttgttttccaaactctcaagtttgttgatttgttcaacttttccgctctgggcgtccagt 121  Q
    |||||||||||||||||| | | |||| |||||||||||||||| ||||||||||||||||||||| || ||||||| |||||| |||||| | ||||||    
T  28612160 tggcacagaaattgaatcaccaattccgacaaataaaatgttgtcttccaaactctcaagtttgttcatctgttcaagttttccactctggacatccagt 28612259  T
Q  122 tccaattt 129  Q
    ||||||||    
T  28612260 tccaattt 28612267  T

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Target: chr7; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 25 - 134
Target Start/End: Complemental strand, 29270696 - 29270587
Alignment:
Q  25 cacagaaattgaatcgctagttccaacaaataaaatgttgttttccaaactctcaagtttgttgatttgttcaacttttccgctctgggcgtccagttcc 124  Q
    ||||||||||||||| |   |||| ||||||||||||||||| || |||||||||||||| || ||||||||||||||||||||||||||||||| ||||    
T  29270696 cacagaaattgaatcaccgattccgacaaataaaatgttgttctctaaactctcaagtttttttatttgttcaacttttccgctctgggcgtccatttcc 29270597  T
Q  125 aatttcaaaa 134  Q
    | ||| ||||    
T  29270596 attttgaaaa 29270587  T

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Target: chr7; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 45 - 134
Target Start/End: Complemental strand, 29288500 - 29288411
Alignment:
Q  45 ttccaacaaataaaatgttgttttccaaactctcaagtttgttgatttgttcaacttttccgctctgggcgtccagttccaatttcaaaa 134  Q
    |||| |||||||||||||||| ||||||||||||||||||||| || ||||||| |||||| |||||||| |||||||||||||| ||||    
T  29288500 ttccgacaaataaaatgttgtcttccaaactctcaagtttgttcatctgttcaagttttccactctgggcatccagttccaatttgaaaa 29288411  T

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Target: chr7; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 145 - 211
Target Start/End: Original strand, 28612975 - 28613041
Alignment:
Q  145 caagtcttgcacaccacacgaaacctaacatgatctatgtgttcttccaacttatcaagaaccaaac 211  Q
    |||||||||||||| |||  ||||||||||||||||||||||||||||||||| |||||||||||||    
T  28612975 caagtcttgcacacgacagcaaacctaacatgatctatgtgttcttccaacttgtcaagaaccaaac 28613041  T

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Target: chr7; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 45 - 134
Target Start/End: Complemental strand, 29283061 - 29282972
Alignment:
Q  45 ttccaacaaataaaatgttgttttccaaactctcaagtttgttgatttgttcaacttttccgctctgggcgtccagttccaatttcaaaa 134  Q
    |||| |||||||||||| ||| ||||||||||||||||||||| || ||||| | |||||| |||||||| |||||||||||||| ||||    
T  29283061 ttccgacaaataaaatgctgtcttccaaactctcaagtttgttcatgtgttctagttttccactctgggcatccagttccaatttgaaaa 29282972  T

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Target: chr7; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 151 - 219
Target Start/End: Complemental strand, 28621319 - 28621251
Alignment:
Q  151 ttgcacaccacacgaaacctaacatgatctatgtgttcttccaacttatcaagaaccaaactaagagga 219  Q
    |||||||| |||| ||||||||||||||| |||||||||||||| || |||||||||||||||||||||    
T  28621319 ttgcacacgacaccaaacctaacatgatcgatgtgttcttccaatttgtcaagaaccaaactaagagga 28621251  T

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Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 145 - 219
Target Start/End: Complemental strand, 28614726 - 28614653
Alignment:
Q  145 caagtcttgcacaccacacgaaacctaacatgatctatgtgttcttccaacttatcaagaaccaaactaagagga 219  Q
    |||||||||||||| ||||  |||||||||||||||||||||||||| |||||  ||||||||||| ||||||||    
T  28614726 caagtcttgcacacgacactgaacctaacatgatctatgtgttcttctaactt-gcaagaaccaaattaagagga 28614653  T

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Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 45 - 105
Target Start/End: Complemental strand, 28623388 - 28623328
Alignment:
Q  45 ttccaacaaataaaatgttgttttccaaactctcaagtttgttgatttgttcaacttttcc 105  Q
    |||||||||| |||||||||| ||||||||||| ||||||||| |||||||||| ||||||    
T  28623388 ttccaacaaaaaaaatgttgtcttccaaactcttaagtttgttcatttgttcaagttttcc 28623328  T

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Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 149 - 258
Target Start/End: Complemental strand, 29282245 - 29282136
Alignment:
Q  149 tcttgcacaccacacgaaacctaacatgatctatgtgttcttccaacttatcaagaaccaaactaagagg-agaggattctaaattttcccaatcaacct 247  Q
    |||| ||||| ||||  ||||||||||  ||| | ||| |||||||||| |||||||||||||||||||| ||   ||| ||||||| ||||||||||||    
T  29282245 tcttacacacaacaccgaacctaacatagtctgtttgtacttccaacttttcaagaaccaaactaagaggaagttcatt-taaatttgcccaatcaacct 29282147  T
Q  248 tcctcattgct 258  Q
    |||||||||||    
T  29282146 tcctcattgct 29282136  T

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Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 149 - 219
Target Start/End: Complemental strand, 29287699 - 29287629
Alignment:
Q  149 tcttgcacaccacacgaaacctaacatgatctatgtgttcttccaacttatcaagaaccaaactaagagga 219  Q
    |||| |||||||||| |||||||||||  ||| | ||| |||||||||| |||||||||||||||||||||    
T  29287699 tcttacacaccacaccaaacctaacatagtctgtttgtacttccaacttttcaagaaccaaactaagagga 29287629  T

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Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 178 - 242
Target Start/End: Complemental strand, 29287040 - 29286976
Alignment:
Q  178 tctatgtgttcttccaacttatcaagaaccaaactaagaggagaggattctaaattttcccaatc 242  Q
    |||||||||||||||||||| ||||| |||||||| |||||  || ||||||||||| |||||||    
T  29287040 tctatgtgttcttccaacttgtcaagcaccaaactgagagggtagcattctaaatttgcccaatc 29286976  T

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Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 129
Target Start/End: Complemental strand, 28615516 - 28615439
Alignment:
Q  52 aaataaaatgttgttttccaaactctcaagtttgttgatttgttcaacttttccgctctgggcgtccagttccaattt 129  Q
    |||||||||||||| | ||||||||| |||  |||| |||||| ||| |||||| |||| || |||||||| ||||||    
T  28615516 aaataaaatgttgtctcccaaactcttaagcatgttcatttgtacaagttttccactcttggtgtccagtttcaattt 28615439  T

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Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 352 - 397
Target Start/End: Complemental strand, 29286942 - 29286897
Alignment:
Q  352 tatagacagaaactccatttaaatatttttattggcttaagtactt 397  Q
    |||||||||||||||| ||||||||| ||||||||| || ||||||    
T  29286942 tatagacagaaactccgtttaaatatctttattggcctacgtactt 29286897  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 149 - 219
Target Start/End: Complemental strand, 49149636 - 49149566
Alignment:
Q  149 tcttgcacaccacacgaaacctaacatgatctatgtgttcttccaacttatcaagaaccaaactaagagga 219  Q
    ||||||||||  ||| ||||| ||||||||||||||||||||| ||| | ||||||||||||| |||||||    
T  49149636 tcttgcacacagcaccaaaccaaacatgatctatgtgttcttctaacatgtcaagaaccaaaccaagagga 49149566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 149 - 241
Target Start/End: Complemental strand, 4235496 - 4235404
Alignment:
Q  149 tcttgcacaccacacgaaacctaacatgatctatgtgttcttccaacttatcaagaaccaaactaagaggagaggattctaaattttcccaat 241  Q
    ||||||||||  ||| ||||| |||||||| |||||||||||| ||||| ||||| | |||||||||||||   | |||||||||| ||||||    
T  4235496 tcttgcacacagcaccaaaccaaacatgatatatgtgttcttctaacttgtcaagtatcaaactaagaggaagtgcttctaaatttgcccaat 4235404  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 145 - 241
Target Start/End: Complemental strand, 49145093 - 49144997
Alignment:
Q  145 caagtcttgcacaccacacgaaacctaacatgatctatgtgttcttccaacttatcaagaaccaaactaagaggagaggattctaaattttcccaat 241  Q
    ||||||||||||||  ||| ||||  ||||| ||||||||||||||| ||||| ||||||| |||| |||||| |  || |||||||||| ||||||    
T  49145093 caagtcttgcacacagcaccaaacgaaacataatctatgtgttcttctaacttgtcaagaatcaaattaagagcaagggcttctaaatttgcccaat 49144997  T

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