View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16714_low_21 (Length: 402)
Name: NF16714_low_21
Description: NF16714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16714_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 87 - 376
Target Start/End: Original strand, 47890218 - 47890502
Alignment:
| Q |
87 |
gaagttgctaacaaacccgccaaaataacctaaccatactaaagactgattgaatgttaaacggtttaatcgttaggttgagttggatttttaaaacacg |
186 |
Q |
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| T |
47890218 |
gaagttgctaacaa-cccgccaaaataacctaacaatactaaagactgattgaatgttaaacggtttaatcgttaggttgagttggatttttaaaacaag |
47890316 |
T |
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| Q |
187 |
atatcacatgtcaactttgattatgattaatggagttgcttgtcttgagcaacaacaaaatattacgaagacaagctcatcagcttgcacgcaaaactaa |
286 |
Q |
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| T |
47890317 |
atatcacatgtcaactttgattatgataaatggagttgcttgtcttgagcaacaacaaaatactacgaagacaagctcatcagcttgcacgcaa----aa |
47890412 |
T |
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| Q |
287 |
ctaaactattcatagatttgtctttccgtaagaaagggggatctaactacatggtttctgattgttaatttcatatattggtgaccgtat |
376 |
Q |
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| T |
47890413 |
ctaaactattcatagatttgtctttccgtacgaaagggggatctaaccacatggtttctgattgttaatttcatatattggtgaccgtat |
47890502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 47890126 - 47890191
Alignment:
| Q |
18 |
atatatgattctacgtttaaaaatccaacttaatatcagaccgatgagactttaggttatgtttta |
83 |
Q |
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| T |
47890126 |
atatatgattctacgtttaaaaatccaacttgacatcagaccgatgagactttaggttatgtttta |
47890191 |
T |
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