View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16714_low_23 (Length: 381)
Name: NF16714_low_23
Description: NF16714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16714_low_23 |
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Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 316
Target Start/End: Original strand, 10386200 - 10386494
Alignment:
| Q |
18 |
agttaatgttataattagctctattagtgaactatttacaagtccaattgatgactagtttttgttgaaaaacctacctcacttagggnnnnnnn---tc |
114 |
Q |
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| T |
10386200 |
agttaatgttataattagctctattagcgaactatttacaagtccaattgatgactagtttttgttgaaaaacctacctgacttggggaaaaaaaaaatc |
10386299 |
T |
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| Q |
115 |
tttcaagcacaaactgaaatttataatccctaaaaatactcaaatttataaccttataattaaaatatttcagtccgattccattcaaatcaacatattg |
214 |
Q |
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| T |
10386300 |
tttcaatcacaaactcagatttataatccctaaaaatactcaaatttataaccttataattaaaatatttcagtccgattccattcaaatcaacatatgg |
10386399 |
T |
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| Q |
215 |
tattcaaatcatgcttaaaatcttaaaatgataaaaacaaaaactatggtacatgtattatgtatatatgcattcatcattgaagctaattaacaaaaat |
314 |
Q |
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| T |
10386400 |
tattcaaatcatgcttaaaatcttaaaatgataaaaacaaaaactatggtac-------atgtatatatgcattcatcattgaagataattaacaaaaat |
10386492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 333 - 372
Target Start/End: Original strand, 10386487 - 10386526
Alignment:
| Q |
333 |
aaaattcatataggcttgagcaaaattaccttcatctcac |
372 |
Q |
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| T |
10386487 |
aaaaatcatataggcttgagcaaaattaccttcatttcac |
10386526 |
T |
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