View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16714_low_24 (Length: 356)
Name: NF16714_low_24
Description: NF16714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16714_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 342
Target Start/End: Original strand, 24562229 - 24562569
Alignment:
| Q |
1 |
agcaaaggcacagtggaagaaaatcactaaagttagatgattaaaattaagaaaaattaatgggatccaatattacaccttgtaactccacggtacattg |
100 |
Q |
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| T |
24562229 |
agcaaaagcacagagaaagaaaatcactaaagttagatgattaaaattaagaaaaattaatgtgatccaatattacaccttgtaactccacggtacattg |
24562328 |
T |
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| Q |
101 |
atgcaccccttgagaaaccgctgcttttcctgcatttaattcaaccaaatttataagttcaaaacctagataagcttttactttgaagattgactcttat |
200 |
Q |
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| T |
24562329 |
atgcacccctagagaaaccgctgcttttcctgcatttaattcaacaatatttataagttcaaaacctagataagcttt-actttgaagattgactcttat |
24562427 |
T |
|
| Q |
201 |
tataaccatttattaatggacttggaaaagcataaattaattaccttctaatagaggcaacaaattcttgtcttgtcatgtgcttcatttcatctatttc |
300 |
Q |
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||| ||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24562428 |
tattaccatttattaatggacttagaaaagcataaattagttaccttctaatagaggcaacaaattcttgtcttgtcatgtgcttcatttcatctatttc |
24562527 |
T |
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| Q |
301 |
cttctcatagttgctaacctacaaaaacaaaatgtaattaat |
342 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
24562528 |
cttctcatagttgctaacctacaaaaacaaaatgtaattaat |
24562569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 257 - 313
Target Start/End: Original strand, 53234905 - 53234961
Alignment:
| Q |
257 |
gcaacaaattcttgtcttgtcatgtgcttcatttcatctatttccttctcatagttg |
313 |
Q |
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| T |
53234905 |
gcaacaaattcttgtctagtcatgttcttcatgtcatcaatctccttctcatagttg |
53234961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 234 - 312
Target Start/End: Original strand, 41964654 - 41964732
Alignment:
| Q |
234 |
aaattaattaccttctaatagaggcaacaaattcttgtcttgtcatgtgcttcatttcatctatttccttctcatagtt |
312 |
Q |
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| T |
41964654 |
aaattaattaccttcttatggcggcaacaaattctagtcttgtcatgtgcttcatatcttctacttccttctcatagtt |
41964732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 134
Target Start/End: Original strand, 41964423 - 41964480
Alignment:
| Q |
77 |
accttgtaactccacggtacattgatgcaccccttgagaaaccgctgcttttcctgca |
134 |
Q |
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| T |
41964423 |
accttgtgactccacgatacattgatgcaccccttgaaaatccactgctctttctgca |
41964480 |
T |
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