View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16714_low_25 (Length: 339)
Name: NF16714_low_25
Description: NF16714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16714_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 13 - 321
Target Start/End: Complemental strand, 42152994 - 42152665
Alignment:
| Q |
13 |
ttctttgcttaaaataacgacaataaagattttatagtgttaaacatgaaatgtatatggtattc----------------------atgtctattatta |
90 |
Q |
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| T |
42152994 |
ttctttgcttaaaataacgacaataaagattttatagtgataaacatgaaatgtatatggtattcttggtgttaaatattgttgttcatgtctattatta |
42152895 |
T |
|
| Q |
91 |
tgattgtatgttgctaataaggtgctatgttaagttgttattttgcaagcatgtctggataatattttctgatataagagcagatagattatgatagttt |
190 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
42152894 |
tgattgtatgttgctaataaggtgctatgttaagttgttattttgcaagcatgtgtggataatattttctgatataagatcagatagattatgatagttt |
42152795 |
T |
|
| Q |
191 |
atatactataattggaaaggtagttatgatannnnnnnacttactggataagtgtcaaaaataatatccataaattcagatgtgtctcaccggaaccacc |
290 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
42152794 |
atatactataattggaaaggtagttatgatatttttttacttactggataagtgtcaaaaataatatccataaattcagatgtgtctcaccggaacca-c |
42152696 |
T |
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| Q |
291 |
cccagctagtctgggcactagtccaggttca |
321 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
42152695 |
cccagctagtctgggcactagtccaggttca |
42152665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 317
Target Start/End: Original strand, 37607392 - 37607428
Alignment:
| Q |
281 |
cggaaccacccccagctagtctgggcactagtccagg |
317 |
Q |
| |
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|||| |||||||||||||| ||||||||||||||||| |
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| T |
37607392 |
cggagccacccccagctagcctgggcactagtccagg |
37607428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 317
Target Start/End: Original strand, 37779601 - 37779637
Alignment:
| Q |
281 |
cggaaccacccccagctagtctgggcactagtccagg |
317 |
Q |
| |
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|||| |||||||||||||| ||||||||||||||||| |
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| T |
37779601 |
cggagccacccccagctagcctgggcactagtccagg |
37779637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 317
Target Start/End: Original strand, 49744977 - 49745013
Alignment:
| Q |
281 |
cggaaccacccccagctagtctgggcactagtccagg |
317 |
Q |
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|||| ||| |||||||||||||||||||||||||||| |
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| T |
49744977 |
cggagccaaccccagctagtctgggcactagtccagg |
49745013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 317
Target Start/End: Original strand, 52373676 - 52373712
Alignment:
| Q |
281 |
cggaaccacccccagctagtctgggcactagtccagg |
317 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||||| |
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|
| T |
52373676 |
cggagccacccccagctagtctgggcactagcccagg |
52373712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 317
Target Start/End: Complemental strand, 44239037 - 44239001
Alignment:
| Q |
281 |
cggaaccacccccagctagtctgggcactagtccagg |
317 |
Q |
| |
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|||| |||||||||||||||||||||||||| ||||| |
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|
| T |
44239037 |
cggagccacccccagctagtctgggcactagcccagg |
44239001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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