View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16714_low_26 (Length: 338)
Name: NF16714_low_26
Description: NF16714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16714_low_26 |
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| [»] chr3 (8 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 308; Significance: 1e-173; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 11 - 338
Target Start/End: Original strand, 33397411 - 33397738
Alignment:
| Q |
11 |
cagagagattaaccttgcggagttttgaaagcttttgagtgagaagcttcagagcattattataattgtcgctgtcattggtgattattttagggtaact |
110 |
Q |
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| T |
33397411 |
cagagagattaaccttgcggagttttgaaagcttttgagtgagaagcttcaaagcattattataattgtcactgtcattggtgattattttagggtaact |
33397510 |
T |
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| Q |
111 |
gatatccaattgttggaggaaagggaaggaatcggcaatgaaggatatgtcagtatggtatagagagccgatgttggaacaagtgagagaggttaaggtt |
210 |
Q |
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| T |
33397511 |
gatatccaattgttggaggaaagggaaggaatcggcaatgaaggatatgtcagtatggtatagagagccgatgttggaacaagtgagagaggtcaaggtt |
33397610 |
T |
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| Q |
211 |
gatttagtgtttttgagaatagtttgcaaccctgacgtggggaaagtggggtggtttgagaggttgagagatgtgagacgggagagggaaacagaacggg |
310 |
Q |
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| T |
33397611 |
gatttagtgtttttgagaatagtttgcaatcctaacgtggggaaagtggggtggtttgagaggttgagagatgtgagacgggagagggaaacagaacggg |
33397710 |
T |
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| Q |
311 |
ggattcgagagagaagaatgtttgtgtc |
338 |
Q |
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| T |
33397711 |
ggattcgagagagaagaatgtttgtgtc |
33397738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 11 - 212
Target Start/End: Original strand, 36876488 - 36876698
Alignment:
| Q |
11 |
cagagagattaaccttgcggagttttgaaagcttttgagtgagaagcttcagagcattattataattgtcgctgtc------att---ggtgattatttt |
101 |
Q |
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| T |
36876488 |
cagagaaattaaccttgcgaagttttgaaagcctttgagtaagaagctttagagcattattataagtgtcagtgtcgtagccattaccggttattgtttt |
36876587 |
T |
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| Q |
102 |
agggtaactgatatccaattgttggaggaaagggaaggaatcggcaatgaaggatatgtcagtatggtatagagagccgatgttggaacaagtgagagag |
201 |
Q |
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| T |
36876588 |
ggggaaactgatatccagttgttggaggaaaggaaaagaatgagcaatgaaggatatgtcagtatggtatagagagccaatgttggaacatgtgagagag |
36876687 |
T |
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| Q |
202 |
gttaaggttga |
212 |
Q |
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| T |
36876688 |
gtcaaggttga |
36876698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 11 - 288
Target Start/End: Complemental strand, 27004953 - 27004670
Alignment:
| Q |
11 |
cagagagattaaccttgcggagttttgaaagcttttgagtgagaagcttcagagcattattataattgtcgctgtcattggtgattattttagggtaact |
110 |
Q |
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||||||||||||| |||||||||||||||||||||||||| ||||||| |||||||| | |||| | | | | ||| |||||||| |||| |
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| T |
27004953 |
cagagagattaacattgcggagttttgaaagcttttgagtaagaagctgtagagcattgtaataagcatgagcattaccagatattgttttagggaaact |
27004854 |
T |
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| Q |
111 |
gatatccaattgttggaggaaagggaaggaatcggcaatgaaggatatgtcagtatggtatagagagccgatgttggaacaagtgagagaggttaaggtt |
210 |
Q |
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| T |
27004853 |
gatatccaattgttggaggaaggggaatgaatctgcgatcaaggatatgtgagtgtggcatagagaagccatattggaacatgtgagagaggtcaaggtg |
27004754 |
T |
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| Q |
211 |
gatt------tagtgtttttgagaatagtttgcaaccctgacgtggggaaagtggggtggtttgagaggttgagagatgtgaga |
288 |
Q |
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| T |
27004753 |
gatttagtagtagtctttttgagaagagtttgcaaccctaagacggggaaggtggtgtggttggagaggttgagggatgtgaga |
27004670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 184 - 287
Target Start/End: Complemental strand, 33708024 - 33707921
Alignment:
| Q |
184 |
ttggaacaagtgagagaggttaaggttgatttagtgtttttgagaatagtttgcaaccctgacgtggggaaagtggggtggtttgagaggttgagagatg |
283 |
Q |
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||||||||| |||| ||||| |||||||||||| | |||||||||| | | |||||||| || |||||| ||||||||||| ||||||||||| || | |
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| T |
33708024 |
ttggaacaaatgagggaggtcaaggttgatttattatttttgagaagaactcgcaaccctaactcggggaaggtggggtggttggagaggttgagggaag |
33707925 |
T |
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| Q |
284 |
tgag |
287 |
Q |
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|||| |
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| T |
33707924 |
tgag |
33707921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 217 - 286
Target Start/End: Complemental strand, 37579803 - 37579734
Alignment:
| Q |
217 |
gtgtttttgagaatagtttgcaaccctgacgtggggaaagtggggtggtttgagaggttgagagatgtga |
286 |
Q |
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| T |
37579803 |
gtgtttttgagaatagtctgcaaccctaatacggggaaggtggggtggttggagaggttgagagaagtga |
37579734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 68
Target Start/End: Complemental strand, 37580008 - 37579955
Alignment:
| Q |
15 |
gagattaaccttgcggagttttgaaagcttttgagtgagaagcttcagagcatt |
68 |
Q |
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| T |
37580008 |
gagattaaccttgcagagttttgaaagcttttgagtaagaacctttagagcatt |
37579955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 33093107 - 33093071
Alignment:
| Q |
13 |
gagagattaaccttgcggagttttgaaagcttttgag |
49 |
Q |
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| T |
33093107 |
gagagattaaccttgcggagttttaaaagcttttgag |
33093071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 287
Target Start/End: Complemental strand, 33713837 - 33713755
Alignment:
| Q |
205 |
aaggttgatttagtgtttttgagaatagtttgcaaccctgacgtggggaaagtggggtggtttgagaggttgagagatgtgag |
287 |
Q |
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| T |
33713837 |
aaggttgatttattatttttgagaagagctcgcaaccctaactcagggaaggtggggtggttggagaggttgagggaagtgag |
33713755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 18723594 - 18723550
Alignment:
| Q |
11 |
cagagagattaaccttgcggagttttgaaagcttttgagtgagaa |
55 |
Q |
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| T |
18723594 |
cagaaagattaactttgcggagttttgaaagcctttgagtaagaa |
18723550 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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