View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16714_low_28 (Length: 312)
Name: NF16714_low_28
Description: NF16714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16714_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 16 - 300
Target Start/End: Original strand, 32832950 - 32833230
Alignment:
| Q |
16 |
atcaattactatcaacgttgattcacattatcacttcagctaattttgtttcctcccaatcatacataactttaagcatttcaagcttaatgagaataac |
115 |
Q |
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| T |
32832950 |
atcaattactatcaacgttgattcacattatcacttcagctaattttgtttcctcccaatcatacagaattttaagcatttcaagcttaatgagaataac |
32833049 |
T |
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| Q |
116 |
cgccaaaaccaatcatttggataactggcgtattaattatactctaactaccaaaattaacaggctcgatgaaatgaagtgtcagttagttatcatatat |
215 |
Q |
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| T |
32833050 |
cgccaaaaccaatcatttggataactggcgtattaattatactctaactaccaaaattaacagactgcatgaaatgaagtgtcagttagt-----tatat |
32833144 |
T |
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| Q |
216 |
c-aaacactaaaacggttagacttcggttacacttatttgtgaagcaagcttacaaatcaaacataaggataaaggccactattca |
300 |
Q |
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| T |
32833145 |
caaaacactaaaacggttagacttcggttacagttatttgtgaagcaagcttacaaatcaaacataaggataaaggccactattca |
32833230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 112 - 219
Target Start/End: Original strand, 32839486 - 32839591
Alignment:
| Q |
112 |
taaccgccaaaaccaatcatttggataactggcgtattaattatactctaactaccaaaattaacaggctcgatgaaatgaagtgtcagttagttatcat |
211 |
Q |
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| T |
32839486 |
taaccaccaaaaccaatccttaggataaatggcttattaatta--ctctaactaccaaaattaacaagcttaatgaaatgaagtgtcagttagttatcat |
32839583 |
T |
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| Q |
212 |
atatcaaa |
219 |
Q |
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| T |
32839584 |
atatcaaa |
32839591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 187 - 235
Target Start/End: Complemental strand, 16834737 - 16834688
Alignment:
| Q |
187 |
aaatgaagtgtcagttagttatcatatatc-aaacactaaaacggttaga |
235 |
Q |
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| T |
16834737 |
aaatgaagtgtcagttagttatcatatatcaaaacactaaaacggttaga |
16834688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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