View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16714_low_30 (Length: 308)
Name: NF16714_low_30
Description: NF16714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16714_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 41705429 - 41705132
Alignment:
| Q |
1 |
tgggagagagagttggttgtggtggtggtgtttatggcggtggaagcgtgataatgagtgagttgaggtggatttaaggaggtggtgggttgtgttgaat |
100 |
Q |
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| T |
41705429 |
tgggagagagagttggttgtggtggtggtgtttatggcggtggaagcgtgataatgagtgagttgaggtggatttaaggaggtggtgggttgtgttgaat |
41705330 |
T |
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| Q |
101 |
tctattatggagagtgagtgtgttagaggtaatagtagcatttgagatgaagaatgtgaaatgaagagtgtgatgatgaggagaaataacaggggagaag |
200 |
Q |
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| T |
41705329 |
tctatcatggagagtgagtgtgttagaggtaatagtagcatttgagatgaagaatgtgaaatgaagagtgtgatgaggaggagaaataacaggggagaag |
41705230 |
T |
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| Q |
201 |
ccatttggttaaaca--gtatttgnnnnnnnngtgttggaacttgaatacagagagaggagaagagtttttgaatttgtagatggagtggtgtgtgatga |
298 |
Q |
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| T |
41705229 |
ccatttggttaaacagggtatttg-tttttttgtgttggaacttgaatac--agagaggagaagagtttttgaatttgtagatggagtggtgtgtgatga |
41705133 |
T |
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