View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16714_low_31 (Length: 297)
Name: NF16714_low_31
Description: NF16714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16714_low_31 |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 22 - 281
Target Start/End: Complemental strand, 17185289 - 17185030
Alignment:
| Q |
22 |
tcatgatgacgagaaaaagaagacatgcaatgatgattctgctgttggcaaacacaacaacttgaaactcctccaacccatccatgattccaccgtctgt |
121 |
Q |
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| T |
17185289 |
tcatgatgacgagaaaaagaagacatgcaatgatgattctactgttggcaaacacaacaacttgaaactcctccaacccatccatgattccacagtctgt |
17185190 |
T |
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| Q |
122 |
ctccatttttcaccgtcttccccctcctgtggctgcgatcaaatcgctaacgaacaaaagcttggaggtcaagaaatcgatgctgttaatgatcagcaat |
221 |
Q |
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| T |
17185189 |
ctccatttcttactgtctaccccctcctgcggctgcgatcaaattgctacggaacaaaagcttgggggtcaagaaatcgatgctgttaatgatcagcaat |
17185090 |
T |
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| Q |
222 |
gggagatcaaaaagtttcttacaaagagtgatatctgtcccggtttaattaggcttatgt |
281 |
Q |
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| T |
17185089 |
gggagatcaaaaagtttcttacaaagagtgatatctgtcccggtttaattaggcttatgt |
17185030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 22 - 281
Target Start/End: Original strand, 17195157 - 17195416
Alignment:
| Q |
22 |
tcatgatgacgagaaaaagaagacatgcaatgatgattctgctgttggcaaacacaacaacttgaaactcctccaacccatccatgattccaccgtctgt |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17195157 |
tcatgatgacgagaaaaagaagacatgcaatgatgattctactgttggcaaacacaacaacttgaaactcctccaacccatccatgattccaccgtctgt |
17195256 |
T |
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| Q |
122 |
ctccatttttcaccgtcttccccctcctgtggctgcgatcaaatcgctaacgaacaaaagcttggaggtcaagaaatcgatgctgttaatgatcagcaat |
221 |
Q |
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| T |
17195257 |
ctccatttcttactgtctaccccgtcctgcggctgcgatcaaattgctacggaacaaaagcttgggggtcaagaaatcaatgctgttaatgatcagcaat |
17195356 |
T |
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| Q |
222 |
gggagatcaaaaagtttcttacaaagagtgatatctgtcccggtttaattaggcttatgt |
281 |
Q |
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| T |
17195357 |
gggagatcaaaaagtttcttacaaagagtgatatctgtcccggtttaattaggcttatgt |
17195416 |
T |
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