View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16714_low_32 (Length: 296)
Name: NF16714_low_32
Description: NF16714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16714_low_32 |
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Alignment Details
Target: chr1 (Bit Score: 126; Significance: 5e-65; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 126 - 279
Target Start/End: Complemental strand, 28339905 - 28339753
Alignment:
| Q |
126 |
gagaagagcacactttaaagtcccaaagcaatatcactagactaaccaaaacgagtcattcaaaaactaaaattaattaagatgatacaattagaaagat |
225 |
Q |
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| T |
28339905 |
gagaagagcacactttaaagtcccaaaccaatatcattaaactaatcaaaacgagtcattcaaaaactaaaattaattaagatgatacaatcagaaagat |
28339806 |
T |
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| Q |
226 |
caataattgggacatgtcacatttccatttcgagataaatactagcgtcaacaa |
279 |
Q |
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| T |
28339805 |
caataattgggacatgtcacatttccatttcgagataaatactag-gtcaacaa |
28339753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 18 - 95
Target Start/End: Complemental strand, 28340014 - 28339937
Alignment:
| Q |
18 |
gaagagggttagaaaatgtgtgtcaaagaaatattcattttattataaataggataagataatcacatgattcgttaa |
95 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28340014 |
gaagagggttagaaaatgtgtgtcaaagaaatattcattttattataaataggataagataatcacatgattcgttaa |
28339937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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