View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16714_low_35 (Length: 262)
Name: NF16714_low_35
Description: NF16714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16714_low_35 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 18 - 252
Target Start/End: Complemental strand, 41460447 - 41460213
Alignment:
| Q |
18 |
atcatattcgaaatcaatttcaactgttctttcacataacaataagaagacaaatattggccaatgttttggtctatagtcagaattatgtatacatgaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41460447 |
atcatattcgaaatcaatttcaactgttctttcacataacaataagaagacaaatattggccaatgttttggtctatagtcagaattatgtatacatgaa |
41460348 |
T |
|
| Q |
118 |
agaatccatactaacagaatatagcatcagccttcaaatgcatttattactatagcaatcatatgttacaaaataatttaggagaaaccacaccacccca |
217 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41460347 |
ataatccatactaacagaatatagcatcagccttcaaatgcatttagtactatagcaatcatatgttacaaaataatttaggagaaaccacaccacccca |
41460248 |
T |
|
| Q |
218 |
acacagactatgacaaaaatgagccaatcattcat |
252 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||| |
|
|
| T |
41460247 |
atacagactatgacaaaaatgagccaatcattcat |
41460213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 241
Target Start/End: Complemental strand, 41443662 - 41443586
Alignment:
| Q |
165 |
tactatagcaatcatatgttacaaaataatttaggagaaaccacaccaccccaacacagactatgacaaaaatgagc |
241 |
Q |
| |
|
|||||| |||| ||| |||||||||||| |||||| |||| ||| ||||||||||||||| | |||||||||||| |
|
|
| T |
41443662 |
tactatggcaaccatgtgttacaaaatagattaggaaaaacgacatcaccccaacacagacactaacaaaaatgagc |
41443586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 18 - 119
Target Start/End: Complemental strand, 137150 - 137049
Alignment:
| Q |
18 |
atcatattcgaaatcaatttcaactgttctttcacataacaataagaagacaaatattggccaatgttttggtctatagtcagaattatgtatacatgaa |
117 |
Q |
| |
|
||||||||| | ||||||||||||||||||||||||||| || |||||||||||| ||| |||||||||||||||||| |||||||||| |||||||||| |
|
|
| T |
137150 |
atcatattccatatcaatttcaactgttctttcacataagaagaagaagacaaatcttgtccaatgttttggtctataatcagaattatctatacatgaa |
137051 |
T |
|
| Q |
118 |
ag |
119 |
Q |
| |
|
|| |
|
|
| T |
137050 |
ag |
137049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 18 - 119
Target Start/End: Complemental strand, 1393897 - 1393796
Alignment:
| Q |
18 |
atcatattcgaaatcaatttcaactgttctttcacataacaataagaagacaaatattggccaatgttttggtctatagtcagaattatgtatacatgaa |
117 |
Q |
| |
|
||||||||| | ||||||||||||||||||||||| || || |||||||||||| ||| | |||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
1393897 |
atcatattccatatcaatttcaactgttctttcacttatgaagaagaagacaaatcttgtctaatgttttggtctataatcagaattatgtatacatgaa |
1393798 |
T |
|
| Q |
118 |
ag |
119 |
Q |
| |
|
|| |
|
|
| T |
1393797 |
ag |
1393796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 21 - 119
Target Start/End: Complemental strand, 35185293 - 35185192
Alignment:
| Q |
21 |
atattcgaaatcaatttcaactgttctttcacataacaataagaaga---caaatattggccaatgttttggtctatagtcagaattatgtatacatgaa |
117 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||||| || ||||||| ||||| ||| |||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
35185293 |
atattccatatcaatttcaactgttctttcacataagaagaagaagaagacaaatcttgtccaatgttttggtctataatcagaattatgtatacatgaa |
35185194 |
T |
|
| Q |
118 |
ag |
119 |
Q |
| |
|
|| |
|
|
| T |
35185193 |
ag |
35185192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University