View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16714_low_36 (Length: 250)

Name: NF16714_low_36
Description: NF16714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16714_low_36
NF16714_low_36
[»] chr1 (12 HSPs)
chr1 (6-250)||(16220574-16220817)
chr1 (23-102)||(16537002-16537081)
chr1 (24-106)||(18407179-18407261)
chr1 (24-106)||(27226303-27226385)
chr1 (24-106)||(42830552-42830634)
chr1 (29-106)||(23739794-23739871)
chr1 (6-76)||(18406526-18406596)
chr1 (56-106)||(19997650-19997700)
chr1 (24-106)||(36605378-36605460)
chr1 (22-76)||(46682687-46682741)
chr1 (29-106)||(43319935-43320012)
chr1 (57-106)||(47233692-47233741)
[»] chr7 (13 HSPs)
chr7 (24-106)||(38790718-38790800)
chr7 (24-106)||(3340788-3340870)
chr7 (6-76)||(43450779-43450849)
chr7 (22-106)||(25607589-25607673)
chr7 (6-106)||(40400899-40400999)
chr7 (22-106)||(42813556-42813640)
chr7 (55-106)||(8379732-8379783)
chr7 (22-104)||(2935740-2935822)
chr7 (29-99)||(35783382-35783452)
chr7 (29-106)||(28308017-28308094)
chr7 (23-76)||(36687310-36687363)
chr7 (6-106)||(12677720-12677820)
chr7 (6-106)||(12679615-12679715)
[»] chr3 (16 HSPs)
chr3 (24-106)||(47794000-47794082)
chr3 (57-106)||(32373346-32373395)
chr3 (24-106)||(1263036-1263118)
chr3 (6-108)||(32255700-32255802)
chr3 (24-78)||(47794657-47794711)
chr3 (24-106)||(49764507-49764589)
chr3 (25-106)||(11581854-11581935)
chr3 (29-106)||(37973460-37973537)
chr3 (29-76)||(1364059-1364106)
chr3 (23-102)||(14601006-14601085)
chr3 (24-106)||(7725383-7725465)
chr3 (24-106)||(27255951-27256033)
chr3 (58-108)||(28248130-28248180)
chr3 (22-106)||(1763658-1763742)
chr3 (30-106)||(40974059-40974135)
chr3 (24-76)||(40974705-40974757)
[»] chr2 (6 HSPs)
chr2 (26-108)||(38910691-38910773)
chr2 (24-105)||(11563811-11563892)
chr2 (21-106)||(40020732-40020817)
chr2 (56-106)||(14743105-14743155)
chr2 (53-106)||(37330352-37330405)
chr2 (6-106)||(10357098-10357198)
[»] scaffold1192 (1 HSPs)
scaffold1192 (26-106)||(177-257)
[»] chr8 (11 HSPs)
chr8 (6-106)||(6099338-6099437)
chr8 (24-103)||(17496907-17496985)
chr8 (27-102)||(30353864-30353939)
chr8 (24-106)||(11759405-11759487)
chr8 (56-105)||(4256608-4256657)
chr8 (29-106)||(26928210-26928287)
chr8 (57-106)||(37265543-37265592)
chr8 (29-106)||(43764100-43764177)
chr8 (53-106)||(44746817-44746870)
chr8 (22-106)||(29636364-29636448)
chr8 (58-106)||(40298970-40299018)
[»] scaffold0201 (1 HSPs)
scaffold0201 (27-106)||(15972-16051)
[»] chr5 (7 HSPs)
chr5 (29-104)||(17967839-17967914)
chr5 (29-106)||(31476942-31477019)
chr5 (29-105)||(6048005-6048081)
chr5 (24-106)||(6031326-6031408)
chr5 (57-106)||(5345109-5345158)
chr5 (29-106)||(9017667-9017744)
chr5 (29-106)||(15175225-15175302)
[»] chr4 (14 HSPs)
chr4 (51-106)||(37735457-37735512)
chr4 (24-106)||(17729526-17729608)
chr4 (24-106)||(33047207-33047289)
chr4 (6-106)||(721319-721419)
chr4 (30-106)||(45847156-45847232)
chr4 (30-106)||(49702397-49702473)
chr4 (30-106)||(55069492-55069568)
chr4 (24-106)||(23308813-23308895)
chr4 (24-106)||(28464216-28464298)
chr4 (29-106)||(7796966-7797043)
chr4 (29-106)||(16960225-16960302)
chr4 (29-106)||(30192529-30192606)
chr4 (6-106)||(755504-755604)
chr4 (22-106)||(26809024-26809108)
[»] scaffold0368 (1 HSPs)
scaffold0368 (24-106)||(10608-10690)
[»] chr6 (2 HSPs)
chr6 (24-106)||(12693860-12693942)
chr6 (22-106)||(34794500-34794584)
[»] scaffold0004 (1 HSPs)
scaffold0004 (57-106)||(351914-351963)


Alignment Details
Target: chr1 (Bit Score: 164; Significance: 9e-88; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 6 - 250
Target Start/End: Original strand, 16220574 - 16220817
Alignment:
Q  6 gtaaattatacttcgtttcccttaaagatgtttgaattactgttccatctcctcttatattaaaatatacattttattctcctcttattcaaaacatatt 105  Q
    |||||||| |||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16220574 gtaaattacacttcgctttccttacagatgtttgaattactgttccatctcctcttatattaaaatatacattttattctcctcttattcaaaacatatt 16220673  T
Q  106 atactnnnnnnntatatatattagggtttttaaatcgttgaacaacataattgttgtacataagtcttaaggtgtttaaatctctttaggtcaacatctc 205  Q
    || ||        | || |||||||| |||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |    
T  16220674 atgctaaaaaaaaa-atctattagggattttgaatcgttgaacaacataattgttttacttaagtcttaaggtgtttaaatctctttaggtcaacatccc 16220772  T
Q  206 gaaattatgcttaaccatgtttaaatttgtgattaatgaaattac 250  Q
    |||||||||||||| ||||||||||||||||||||||||||||||    
T  16220773 gaaattatgcttaagcatgtttaaatttgtgattaatgaaattac 16220817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 102
Target Start/End: Complemental strand, 16537081 - 16537002
Alignment:
Q  23 tcccttaaagatgtttgaattactgttccatctcctcttatattaaaatatacattttattctcctcttattcaaaacat 102  Q
    ||||| ||||||| |||||||||  |||| || |||||||| |||||||||||| |||  || |||||||||||||||||    
T  16537081 tccctcaaagatgcttgaattacacttccctcccctcttatgttaaaatatacactttcctcccctcttattcaaaacat 16537002  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 24 - 106
Target Start/End: Complemental strand, 18407261 - 18407179
Alignment:
Q  24 cccttaaagatgtttgaattactgttccatctcctcttatattaaaatatacattttattctcctcttattcaaaacatatta 106  Q
    ||||||||||||||||||||||  |  | || |||||||| ||||||||||||||    || |||||||||||||||||||||    
T  18407261 cccttaaagatgtttgaattacactctcctcccctcttatgttaaaatatacattcccctcccctcttattcaaaacatatta 18407179  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 24 - 106
Target Start/End: Complemental strand, 27226385 - 27226303
Alignment:
Q  24 cccttaaagatgtttgaattactgttccatctcctcttatattaaaatatacattttattctcctcttattcaaaacatatta 106  Q
    |||| ||| |||||||||||||  | || ||||||||||| |||||||||||||||   || |||||| ||||||||||||||    
T  27226385 ccctcaaaaatgtttgaattacactcccctctcctcttatgttaaaatatacatttccctcccctctttttcaaaacatatta 27226303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 24 - 106
Target Start/End: Original strand, 42830552 - 42830634
Alignment:
Q  24 cccttaaagatgtttgaattactgttccatctcctcttatattaaaatatacattttattctcctcttattcaaaacatatta 106  Q
    |||| |||||||||||||||||  | ||  | |||||||| |||||||||||||||   || |||||||||||||||||||||    
T  42830552 ccctcaaagatgtttgaattacactccccgcccctcttatgttaaaatatacatttccctcccctcttattcaaaacatatta 42830634  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 106
Target Start/End: Complemental strand, 23739871 - 23739794
Alignment:
Q  29 aaagatgtttgaattactgttccatctcctcttatattaaaatatacattttattctcctcttattcaaaacatatta 106  Q
    ||||||| |||||||||  |||| || |||||||| |||||||||||| | |  || |||||||||||||||||||||    
T  23739871 aaagatgcttgaattacacttccctcccctcttatgttaaaatatacactctcctcccctcttattcaaaacatatta 23739794  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 76
Target Start/End: Original strand, 18406526 - 18406596
Alignment:
Q  6 gtaaattatacttcgtttcccttaaagatgtttgaattactgttccatctcctcttatattaaaatataca 76  Q
    |||||||||||||| ||||| ||||||||| |||||||||  | || ||  ||||||| ||||||||||||    
T  18406526 gtaaattatacttcctttcctttaaagatgcttgaattacactcccctcctctcttatgttaaaatataca 18406596  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 106
Target Start/End: Original strand, 19997650 - 19997700
Alignment:
Q  56 cctcttatattaaaatatacattttattctcctcttattcaaaacatatta 106  Q
    |||||||| |||||||||||| |||  || |||||||||||||||||||||    
T  19997650 cctcttatgttaaaatatacacttttctcccctcttattcaaaacatatta 19997700  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 106
Target Start/End: Complemental strand, 36605460 - 36605378
Alignment:
Q  24 cccttaaagatgtttgaattactgttccatctcctcttatattaaaatatacattttattctcctcttattcaaaacatatta 106  Q
    |||| |||||||||||||||||  | || || |||||||| |||||||||||| |   ||  |||||||||||||||||||||    
T  36605460 ccctcaaagatgtttgaattacactcccctcccctcttatgttaaaatatacactcattttccctcttattcaaaacatatta 36605378  T

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Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 76
Target Start/End: Original strand, 46682687 - 46682741
Alignment:
Q  22 ttcccttaaagatgtttgaattactgttccatctcctcttatattaaaatataca 76  Q
    |||||| |||||||||||||||||  |||  ||||||||||| ||||||||||||    
T  46682687 ttccctcaaagatgtttgaattacacttcgctctcctcttatgttaaaatataca 46682741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 106
Target Start/End: Original strand, 43319935 - 43320012
Alignment:
Q  29 aaagatgtttgaattactgttccatctcctcttatattaaaatatacattttattctcctcttattcaaaacatatta 106  Q
    |||||||||||||||||  | || |||||| |||| ||||||||||||||    || ||||||| |||||||||||||    
T  43319935 aaagatgtttgaattacactcccctctccttttatgttaaaatatacattcccctcccctcttaatcaaaacatatta 43320012  T

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Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 106
Target Start/End: Complemental strand, 47233741 - 47233692
Alignment:
Q  57 ctcttatattaaaatatacattttattctcctcttattcaaaacatatta 106  Q
    ||||||| ||||||||||||||   ||| |||||||||||||||||||||    
T  47233741 ctcttatgttaaaatatacattcccttcccctcttattcaaaacatatta 47233692  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 24 - 106
Target Start/End: Complemental strand, 38790800 - 38790718
Alignment:
Q  24 cccttaaagatgtttgaattactgttccatctcctcttatattaaaatatacattttattctcctcttattcaaaacatatta 106  Q
    |||| |||||||||||||||||  | || ||||||||||||||||||||||||  |   || |||||||||||||||||||||    
T  38790800 ccctcaaagatgtttgaattacactcccctctcctcttatattaaaatatacacgtccctcccctcttattcaaaacatatta 38790718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 24 - 106
Target Start/End: Original strand, 3340788 - 3340870
Alignment:
Q  24 cccttaaagatgtttgaattactgttccatctcctcttatattaaaatatacattttattctcctcttattcaaaacatatta 106  Q
    |||| ||||||| |||||||||  |||| |  |||||||| |||||||||||| || |||| |||||||||||||| ||||||    
T  3340788 ccctcaaagatgcttgaattacatttcccttccctcttatgttaaaatatacacttcattcccctcttattcaaaagatatta 3340870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 6 - 76
Target Start/End: Complemental strand, 43450849 - 43450779
Alignment:
Q  6 gtaaattatacttcgtttcccttaaagatgtttgaattactgttccatctcctcttatattaaaatataca 76  Q
    |||||||| | ||| ||||||| |||||||||||||||||  |||| |||  |||||||||||||||||||    
T  43450849 gtaaattacatttcttttccctcaaagatgtttgaattacatttccctcttatcttatattaaaatataca 43450779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 106
Target Start/End: Complemental strand, 25607673 - 25607589
Alignment:
Q  22 ttcccttaaagatgtttgaattactgttccatctcctcttatattaaaatatacattttattctcctcttattcaaaacatatta 106  Q
    ||||||||||||||||||||||||  | || || |||||||  |||||||||||| |    || |||||||||||||||||||||    
T  25607673 ttcccttaaagatgtttgaattacactcccctcccctcttaagttaaaatatacactcccctcccctcttattcaaaacatatta 25607589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 106
Target Start/End: Original strand, 40400899 - 40400999
Alignment:
Q  6 gtaaattatacttcgtttcccttaaagatgtttgaattactgttccatctcctcttatattaaaatatacattttattctcctcttattcaaaacatatt 105  Q
    |||||||| |||||  |||||| ||||||| |||||||||  |  |||| |||||||| |||||||||||| |    || ||||||||||||||||||||    
T  40400899 gtaaattacacttcccttccctcaaagatgcttgaattacactctcatcccctcttatgttaaaatatacactcctctcccctcttattcaaaacatatt 40400998  T
Q  106 a 106  Q
    |    
T  40400999 a 40400999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 106
Target Start/End: Complemental strand, 42813640 - 42813556
Alignment:
Q  22 ttcccttaaagatgtttgaattactgttccatctcctcttatattaaaatatacattttattctcctcttattcaaaacatatta 106  Q
    |||||| ||||||| |||||||||  | || ||  ||||||| |||||||||||| |||  || |||||||||||||||||||||    
T  42813640 ttccctcaaagatgcttgaattacactcccctcctctcttatgttaaaatatacactttcctcccctcttattcaaaacatatta 42813556  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 106
Target Start/End: Complemental strand, 8379783 - 8379732
Alignment:
Q  55 tcctcttatattaaaatatacattttattctcctcttattcaaaacatatta 106  Q
    |||||||||||||||||||| |||||  || |||||||||| ||||||||||    
T  8379783 tcctcttatattaaaatatatatttttatcccctcttattcgaaacatatta 8379732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 104
Target Start/End: Complemental strand, 2935822 - 2935740
Alignment:
Q  22 ttcccttaaagatgtttgaattactgttccatctcctcttatattaaaatatacattttattctcctcttattcaaaacatat 104  Q
    |||||| ||||||| |||||||||  | || || |||||||| |||||||||||| ||   || |||||||||||||||||||    
T  2935822 ttccctcaaagatgcttgaattacactcccttcccctcttatgttaaaatatacacttctctcccctcttattcaaaacatat 2935740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 99
Target Start/End: Original strand, 35783382 - 35783452
Alignment:
Q  29 aaagatgtttgaattactgttccatctcctcttatattaaaatatacattttattctcctcttattcaaaa 99  Q
    ||||||| |||||||||  |||| ||||||||||| |||||||||||| |  |||| |||||||| |||||    
T  35783382 aaagatgcttgaattacacttccctctcctcttatgttaaaatatacactccattcccctcttatgcaaaa 35783452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 106
Target Start/End: Original strand, 28308017 - 28308094
Alignment:
Q  29 aaagatgtttgaattactgttccatctcctcttatattaaaatatacattttattctcctcttattcaaaacatatta 106  Q
    ||||||| |||||||||  | || ||||||||||| |||||||||| | |||  || |||||| ||||||||||||||    
T  28308017 aaagatgcttgaattacactcccctctcctcttatgttaaaatatatacttttctcccctctttttcaaaacatatta 28308094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 76
Target Start/End: Original strand, 36687310 - 36687363
Alignment:
Q  23 tcccttaaagatgtttgaattactgttccatctcctcttatattaaaatataca 76  Q
    ||||||||||||| |||||||||  |||| || |||||||| ||||||||||||    
T  36687310 tcccttaaagatgcttgaattacacttccctcccctcttatgttaaaatataca 36687363  T

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Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 106
Target Start/End: Complemental strand, 12677820 - 12677720
Alignment:
Q  6 gtaaattatacttcgtttcccttaaagatgtttgaattactgttccatctcctcttatattaaaatatacattttattctcctcttattcaaaacatatt 105  Q
    |||| ||| ||||| ||||||| |||||||||| ||| ||  |  | || |||||||| |||||||||||| |   ||| ||||||||||||||||||||    
T  12677820 gtaagttacacttcctttccctgaaagatgtttaaatgacactctcgtcacctcttatgttaaaatatacaatgctttcccctcttattcaaaacatatt 12677721  T
Q  106 a 106  Q
    |    
T  12677720 a 12677720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 106
Target Start/End: Complemental strand, 12679715 - 12679615
Alignment:
Q  6 gtaaattatacttcgtttcccttaaagatgtttgaattactgttccatctcctcttatattaaaatatacattttattctcctcttattcaaaacatatt 105  Q
    |||| ||| ||||| ||||||| |||||||||| ||| ||  |  | || |||||||| |||||||||||| |   ||| ||||||||||||||||||||    
T  12679715 gtaagttacacttcctttccctgaaagatgtttaaatgacactctcgtcacctcttatgttaaaatatacaatgctttcccctcttattcaaaacatatt 12679616  T
Q  106 a 106  Q
    |    
T  12679615 a 12679615  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 24 - 106
Target Start/End: Original strand, 47794000 - 47794082
Alignment:
Q  24 cccttaaagatgtttgaattactgttccatctcctcttatattaaaatatacattttattctcctcttattcaaaacatatta 106  Q
    |||| ||||||| |||||||||  | || || |||||||| |||||||||||| ||| ||| |||||||||||||||||||||    
T  47794000 ccctcaaagatgcttgaattacactcccctcacctcttatcttaaaatatacactttcttcccctcttattcaaaacatatta 47794082  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 57 - 106
Target Start/End: Original strand, 32373346 - 32373395
Alignment:
Q  57 ctcttatattaaaatatacattttattctcctcttattcaaaacatatta 106  Q
    ||||||| ||||||||||||||||  ||||||||||||||||||||||||    
T  32373346 ctcttatgttaaaatatacattttcctctcctcttattcaaaacatatta 32373395  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 24 - 106
Target Start/End: Complemental strand, 1263118 - 1263036
Alignment:
Q  24 cccttaaagatgtttgaattactgttccatctcctcttatattaaaatatacattttattctcctcttattcaaaacatatta 106  Q
    |||| ||||||| |||||||||  | || || |||||||| |||||||||||| |||  || |||||||||||||||||||||    
T  1263118 ccctcaaagatgcttgaattacactcccctcccctcttatgttaaaatatacactttcctcccctcttattcaaaacatatta 1263036  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 6 - 108
Target Start/End: Complemental strand, 32255802 - 32255700
Alignment:
Q  6 gtaaattatacttcgtttcccttaaagatgtttgaattactgttccatctcctcttatattaaaatatacattttattctcctcttattcaaaacatatt 105  Q
    |||||||| |||||  | |||| ||||||| |||||||||  |||| ||||||||||| |||||||||| | ||   ||  |||||||||||||||||||    
T  32255802 gtaaattacacttccctcccctcaaagatgcttgaattacacttccctctcctcttatgttaaaatatatacttccctccactcttattcaaaacatatt 32255703  T
Q  106 ata 108  Q
    |||    
T  32255702 ata 32255700  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 24 - 78
Target Start/End: Complemental strand, 47794711 - 47794657
Alignment:
Q  24 cccttaaagatgtttgaattactgttccatctcctcttatattaaaatatacatt 78  Q
    ||||||||||||||||||||||  | || ||||||||||| ||||||||||||||    
T  47794711 cccttaaagatgtttgaattacactcccctctcctcttatgttaaaatatacatt 47794657  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 24 - 106
Target Start/End: Original strand, 49764507 - 49764589
Alignment:
Q  24 cccttaaagatgtttgaattactgttccatctcctcttatattaaaatatacattttattctcctcttattcaaaacatatta 106  Q
    |||| ||||||| |||||||||  |||| || |||||||| |||||||||||| ||   || |||||||||||||||||||||    
T  49764507 ccctcaaagatgcttgaattacacttccctcccctcttatgttaaaatatacacttctctcccctcttattcaaaacatatta 49764589  T

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Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 106
Target Start/End: Original strand, 11581854 - 11581935
Alignment:
Q  25 ccttaaagatgtttgaattactgttccatctcctcttatattaaaatatacattttattctcctcttattcaaaacatatta 106  Q
    |||||||||||||||||||||  |||  || |||||||| |||||||||||| |    || |||||||||||||||||||||    
T  11581854 ccttaaagatgtttgaattacatttctctcccctcttatgttaaaatatacactcccctcccctcttattcaaaacatatta 11581935  T

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Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 106
Target Start/End: Original strand, 37973460 - 37973537
Alignment:
Q  29 aaagatgtttgaattactgttccatctcctcttatattaaaatatacattttattctcctcttattcaaaacatatta 106  Q
    |||||||||||||||||  || |||| ||| ||||||||||||||||| ||   || |||||||| ||||||||||||    
T  37973460 aaagatgtttgaattacactttcatccccttttatattaaaatatacaattctctcccctcttatgcaaaacatatta 37973537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 76
Target Start/End: Complemental strand, 1364106 - 1364059
Alignment:
Q  29 aaagatgtttgaattactgttccatctcctcttatattaaaatataca 76  Q
    |||||||||||||||||  | |||||||||||||| ||||||||||||    
T  1364106 aaagatgtttgaattacactcccatctcctcttatgttaaaatataca 1364059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 102
Target Start/End: Complemental strand, 14601085 - 14601006
Alignment:
Q  23 tcccttaaagatgtttgaattactgttccatctcctcttatattaaaatatacattttattctcctcttattcaaaacat 102  Q
    |||||||||||||||||||||||  |||| ||   |||||| |||||||||||| ||   || |||||||||||||||||    
T  14601085 tcccttaaagatgtttgaattacacttccttcctttcttatgttaaaatatacacttccctcccctcttattcaaaacat 14601006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 106
Target Start/End: Complemental strand, 7725465 - 7725383
Alignment:
Q  24 cccttaaagatgtttgaattactgttccatctcctcttatattaaaatatacattttattctcctcttattcaaaacatatta 106  Q
    |||| ||||||| |||||||||  | ||  |||||||||| |||||||||||| || | || |||||| ||||||||||||||    
T  7725465 ccctcaaagatgcttgaattacactccccactcctcttatgttaaaatatacacttcactcccctctttttcaaaacatatta 7725383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 106
Target Start/End: Complemental strand, 27256033 - 27255951
Alignment:
Q  24 cccttaaagatgtttgaattactgttccatctcctcttatattaaaatatacattttattctcctcttattcaaaacatatta 106  Q
    |||| ||||||| |||||||||  | || || ||||||||||||||||||||| ||   || ||| |||||||||||||||||    
T  27256033 ccctcaaagatgcttgaattacactcccctcccctcttatattaaaatatacacttccctcccctattattcaaaacatatta 27255951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 108
Target Start/End: Complemental strand, 28248180 - 28248130
Alignment:
Q  58 tcttatattaaaatatacattttattctcctcttattcaaaacatattata 108  Q
    |||||| ||||||||||||||||  || |||||| ||||||||||||||||    
T  28248180 tcttatgttaaaatatacatttttctcccctcttgttcaaaacatattata 28248130  T

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Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 106
Target Start/End: Original strand, 1763658 - 1763742
Alignment:
Q  22 ttcccttaaagatgtttgaattactgttccatctcctcttatattaaaatatacattttattctcctcttattcaaaacatatta 106  Q
    |||||| |||||||||||||||||  || | || | | |||| |||||||||||| | |  || |||||||||||||||||||||    
T  1763658 ttccctcaaagatgtttgaattacactttcctccctttttatgttaaaatatacactctcctcccctcttattcaaaacatatta 1763742  T

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Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 106
Target Start/End: Original strand, 40974059 - 40974135
Alignment:
Q  30 aagatgtttgaattactgttccatctcctcttatattaaaatatacattttattctcctcttattcaaaacatatta 106  Q
    ||||||||||||||||  | || || |||||||| |||||||||||| |    || |||||||||||||||||||||    
T  40974059 aagatgtttgaattacactcccctcccctcttatgttaaaatatacaatcccctcccctcttattcaaaacatatta 40974135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 76
Target Start/End: Complemental strand, 40974757 - 40974705
Alignment:
Q  24 cccttaaagatgtttgaattactgttccatctcctcttatattaaaatataca 76  Q
    |||| |||||||||||||||||  |||| || |||||||| ||||||||||||    
T  40974757 ccctgaaagatgtttgaattacacttccgtcccctcttatgttaaaatataca 40974705  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 26 - 108
Target Start/End: Original strand, 38910691 - 38910773
Alignment:
Q  26 cttaaagatgtttgaattactgttccatctcctcttatattaaaatatacattttattctcctcttattcaaaacatattata 108  Q
    ||||||||||||||||||||  | || ||  ||||||| |||||||||||| || | || |||||||||||||||||||||||    
T  38910691 cttaaagatgtttgaattacactcccctcctctcttatgttaaaatatacacttcactcccctcttattcaaaacatattata 38910773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 105
Target Start/End: Original strand, 11563811 - 11563892
Alignment:
Q  24 cccttaaagatgtttgaattactgttccatctcctcttatattaaaatatacattttattctcctcttattcaaaacatatt 105  Q
    |||| ||||||| |||||||||  |  |||| |||||||| |||||||||||| ||  ||| ||||||||||||||||||||    
T  11563811 ccctcaaagatgcttgaattacactctcatcccctcttatgttaaaatatacacttccttcccctcttattcaaaacatatt 11563892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 106
Target Start/End: Complemental strand, 40020817 - 40020732
Alignment:
Q  21 tttcccttaaagatgtttgaattactgttccatctcctcttatattaaaatatacattttattctcctcttattcaaaacatatta 106  Q
    ||||||||||||||| ||||||||   ||||  | |||||||| |||||||||||| || | || |||||| ||||||||||||||    
T  40020817 tttcccttaaagatgcttgaattatacttcccacccctcttatgttaaaatatacacttcactcccctctttttcaaaacatatta 40020732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 106
Target Start/End: Complemental strand, 14743155 - 14743105
Alignment:
Q  56 cctcttatattaaaatatacattttattctcctcttattcaaaacatatta 106  Q
    |||||||| |||||||||||| |||| || |||| ||||||||||||||||    
T  14743155 cctcttatgttaaaatatacactttactcccctcgtattcaaaacatatta 14743105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 106
Target Start/End: Complemental strand, 37330405 - 37330352
Alignment:
Q  53 tctcctcttatattaaaatatacattttattctcctcttattcaaaacatatta 106  Q
    ||||||||||| |||||||||||| | |  || |||||||||||||||||||||    
T  37330405 tctcctcttatgttaaaatatacactctcatcccctcttattcaaaacatatta 37330352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 106
Target Start/End: Complemental strand, 10357198 - 10357098
Alignment:
Q  6 gtaaattatacttcgtttcccttaaagatgtttgaattactgttccatctcctcttatattaaaatatacattttattctcctcttattcaaaacatatt 105  Q
    ||||||||||||||  | || |||| |||| |||||||||  | || || |||||||| |||||||||||| |    || ||||||||||||||||||||    
T  10357198 gtaaattatacttcactccctttaatgatgcttgaattacactcccctcccctcttatgttaaaatatacactcccctcccctcttattcaaaacatatt 10357099  T
Q  106 a 106  Q
    |    
T  10357098 a 10357098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1192 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold1192
Description:

Target: scaffold1192; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 26 - 106
Target Start/End: Original strand, 177 - 257
Alignment:
Q  26 cttaaagatgtttgaattactgttccatctcctcttatattaaaatatacattttattctcctcttattcaaaacatatta 106  Q
    |||||||||||||||||||| || || || |||||||| |||||||||||| ||    | |||||||||||||||||||||    
T  177 cttaaagatgtttgaattacagtcccctcccctcttatgttaaaatatacacttcccacccctcttattcaaaacatatta 257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 6 - 106
Target Start/End: Original strand, 6099338 - 6099437
Alignment:
Q  6 gtaaattatacttcgtttcccttaaagatgtttgaattactgttccatctcctcttatattaaaatatacattttattctcctcttattcaaaacatatt 105  Q
    |||||||| ||||| ||||| | ||||||| |||||||||  |||| |||||| |||| |||||||||||| |||  || |||||||||||||||| |||    
T  6099338 gtaaattacacttcctttcc-tcaaagatgattgaattacacttccctctccttttatgttaaaatatacactttcctcccctcttattcaaaacaaatt 6099436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 103
Target Start/End: Complemental strand, 17496985 - 17496907
Alignment:
Q  24 cccttaaagatgtttgaattactgttccatctcctcttatattaaaatatacattttattctcctcttattcaaaacata 103  Q
    |||| |||||||||||||||||  | || || |||||||| |||||||||||| | | ||| ||||||||||||||||||    
T  17496985 ccctcaaagatgtttgaattacactccc-tcccctcttatgttaaaatatacaatctcttcccctcttattcaaaacata 17496907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 102
Target Start/End: Original strand, 30353864 - 30353939
Alignment:
Q  27 ttaaagatgtttgaattactgttccatctcctcttatattaaaatatacattttattctcctcttattcaaaacat 102  Q
    ||||||||| |||||||||  |||| ||||||||||| |||||||||||| ||   || ||||||||| |||||||    
T  30353864 ttaaagatgcttgaattacacttccttctcctcttatgttaaaatatacacttccctcccctcttatttaaaacat 30353939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 106
Target Start/End: Original strand, 11759405 - 11759487
Alignment:
Q  24 cccttaaagatgtttgaattactgttccatctcctcttatattaaaatatacattttattctcctcttattcaaaacatatta 106  Q
    |||| ||||||| |||||||||  | || || || ||||| |||||||||||| |||  || |||||||||||||||||||||    
T  11759405 ccctcaaagatgcttgaattacactcccctccccacttatgttaaaatatacactttcctcccctcttattcaaaacatatta 11759487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 105
Target Start/End: Original strand, 4256608 - 4256657
Alignment:
Q  56 cctcttatattaaaatatacattttattctcctcttattcaaaacatatt 105  Q
    |||||||| ||||||||||||||| | |  ||||||||||||||||||||    
T  4256608 cctcttatgttaaaatatacatttcacttccctcttattcaaaacatatt 4256657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 106
Target Start/End: Original strand, 26928210 - 26928287
Alignment:
Q  29 aaagatgtttgaattactgttccatctcctcttatattaaaatatacattttattctcctcttattcaaaacatatta 106  Q
    ||||||| |||||||||  |||| || ||  |||| |||||||||||| |||  || |||||||||||||||||||||    
T  26928210 aaagatgcttgaattacacttccttccccatttatgttaaaatatacactttcctcccctcttattcaaaacatatta 26928287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 106
Target Start/End: Original strand, 37265543 - 37265592
Alignment:
Q  57 ctcttatattaaaatatacattttattctcctcttattcaaaacatatta 106  Q
    ||||||| |||||| ||||| |||  ||||||||||||||||||||||||    
T  37265543 ctcttatgttaaaacatacactttcctctcctcttattcaaaacatatta 37265592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 106
Target Start/End: Original strand, 43764100 - 43764177
Alignment:
Q  29 aaagatgtttgaattactgttccatctcctcttatattaaaatatacattttattctcctcttattcaaaacatatta 106  Q
    |||||||||||||||||  |||  || |||||||| |||||||||||| | |  || ||| |||||||||||||||||    
T  43764100 aaagatgtttgaattacacttctctcccctcttatgttaaaatatacactctcctccccttttattcaaaacatatta 43764177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 106
Target Start/End: Complemental strand, 44746870 - 44746817
Alignment:
Q  53 tctcctcttatattaaaatatacattttattctcctcttattcaaaacatatta 106  Q
    ||||||||||| |||||||||||| |    ||||||||||||||||||||||||    
T  44746870 tctcctcttatgttaaaatatacactcccctctcctcttattcaaaacatatta 44746817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 106
Target Start/End: Complemental strand, 29636448 - 29636364
Alignment:
Q  22 ttcccttaaagatgtttgaattactgttccatctcctcttatattaaaatatacattttattctcctcttattcaaaacatatta 106  Q
    |||||| ||||||| |||||||||  | || || |||||||  |||||||||||| |  | || |||||||||||||||||||||    
T  29636448 ttccctcaaagatgcttgaattacactcccctcccctcttaagttaaaatatacactccactcccctcttattcaaaacatatta 29636364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 106
Target Start/End: Original strand, 40298970 - 40299018
Alignment:
Q  58 tcttatattaaaatatacattttattctcctcttattcaaaacatatta 106  Q
    |||||| |||||||||||| |||  || |||||||||||||||||||||    
T  40298970 tcttatgttaaaatatacactttcctcccctcttattcaaaacatatta 40299018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 106
Target Start/End: Complemental strand, 16051 - 15972
Alignment:
Q  27 ttaaagatgtttgaattactgttccatctcctcttatattaaaatatacattttattctcctcttattcaaaacatatta 106  Q
    |||||||||||||||||||  |||| ||  ||||||| |||||||||||| ||   || |||||||||||||||||||||    
T  16051 ttaaagatgtttgaattacacttccctcatctcttatgttaaaatatacagttccctcccctcttattcaaaacatatta 15972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 104
Target Start/End: Original strand, 17967839 - 17967914
Alignment:
Q  29 aaagatgtttgaattactgttccatctcctcttatattaaaatatacattttattctcctcttattcaaaacatat 104  Q
    ||||||| |||||||||  || ||||||||||||| |||||||||||| ||   || |||||||||||||||||||    
T  17967839 aaagatgcttgaattacattttcatctcctcttatgttaaaatatacacttccatcccctcttattcaaaacatat 17967914  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 106
Target Start/End: Complemental strand, 31477019 - 31476942
Alignment:
Q  29 aaagatgtttgaattactgttccatctcctcttatattaaaatatacattttattctcctcttattcaaaacatatta 106  Q
    ||||||| |||||||||  | || || |||||||| |||||||||||| |||  || |||||||||||||||||||||    
T  31477019 aaagatgcttgaattacactcccctcccctcttatgttaaaatatacactttcatcccctcttattcaaaacatatta 31476942  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 105
Target Start/End: Original strand, 6048005 - 6048081
Alignment:
Q  29 aaagatgtttgaattactgttccatctcctcttatattaaaatatacattttattctcctcttattcaaaacatatt 105  Q
    |||||||||||||||||  |||| || |||||||| |||||||||||| | |  || ||||||||||||| ||||||    
T  6048005 aaagatgtttgaattacacttccctcccctcttatgttaaaatatacactctcctcccctcttattcaaaccatatt 6048081  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 106
Target Start/End: Complemental strand, 6031408 - 6031326
Alignment:
Q  24 cccttaaagatgtttgaattactgttccatctcctcttatattaaaatatacattttattctcctcttattcaaaacatatta 106  Q
    |||| |||||||||||||||||  || |||| | |||||| |||||||||| | |  | || |||||||||||||||||||||    
T  6031408 ccctcaaagatgtttgaattacactttcatcccttcttatgttaaaatatatactccactcccctcttattcaaaacatatta 6031326  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 106
Target Start/End: Complemental strand, 5345158 - 5345109
Alignment:
Q  57 ctcttatattaaaatatacattttattctcctcttattcaaaacatatta 106  Q
    ||||||| |||||||||| | |||  ||||||||||||||||||||||||    
T  5345158 ctcttatgttaaaatatataatttcctctcctcttattcaaaacatatta 5345109  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 106
Target Start/End: Original strand, 9017667 - 9017744
Alignment:
Q  29 aaagatgtttgaattactgttccatctcctcttatattaaaatatacattttattctcctcttattcaaaacatatta 106  Q
    ||||||| |||||||||  | || || |||||||| |||||||||||| ||   || |||||||||||||||||||||    
T  9017667 aaagatgcttgaattacactcccctcccctcttatgttaaaatatacacttccctcccctcttattcaaaacatatta 9017744  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 106
Target Start/End: Original strand, 15175225 - 15175302
Alignment:
Q  29 aaagatgtttgaattactgttccatctcctcttatattaaaatatacattttattctcctcttattcaaaacatatta 106  Q
    ||||||| |||||||||  |||| || |||||||| |||||||||||| ||   || |||||| ||||||||||||||    
T  15175225 aaagatgcttgaattacacttccctcccctcttatgttaaaatatacacttccctcccctctttttcaaaacatatta 15175302  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 51 - 106
Target Start/End: Complemental strand, 37735512 - 37735457
Alignment:
Q  51 catctcctcttatattaaaatatacattttattctcctcttattcaaaacatatta 106  Q
    |||||||||||||||||||||||||| ||   ||| ||||||||||||||||||||    
T  37735512 catctcctcttatattaaaatatacacttctctcttctcttattcaaaacatatta 37735457  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 24 - 106
Target Start/End: Original strand, 17729526 - 17729608
Alignment:
Q  24 cccttaaagatgtttgaattactgttccatctcctcttatattaaaatatacattttattctcctcttattcaaaacatatta 106  Q
    |||| ||| |||||||||||||  |||  ||||||||||| ||||||||||||||    || |||||||||||||||||||||    
T  17729526 ccctcaaatatgtttgaattacacttctctctcctcttatgttaaaatatacattcccctcgcctcttattcaaaacatatta 17729608  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 24 - 106
Target Start/End: Complemental strand, 33047289 - 33047207
Alignment:
Q  24 cccttaaagatgtttgaattactgttccatctcctcttatattaaaatatacattttattctcctcttattcaaaacatatta 106  Q
    ||||||||| ||||||||||||  | || || |||||||| |||||||||||| |   ||| |||||||||||||||||||||    
T  33047289 cccttaaagttgtttgaattacactcccctcccctcttatgttaaaatatacactcccttcccctcttattcaaaacatatta 33047207  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 106
Target Start/End: Original strand, 721319 - 721419
Alignment:
Q  6 gtaaattatacttcgtttcccttaaagatgtttgaattactgttccatctcctcttatattaaaatatacattttattctcctcttattcaaaacatatt 105  Q
    |||||||| |||||  | |||| ||||||| |||||||||  | || || ||||||||||||||||||||| ||   |  ||||||||||||||||||||    
T  721319 gtaaattacacttccctcccctcaaagatgcttgaattacactcccctcccctcttatattaaaatatacacttcccttccctcttattcaaaacatatt 721418  T
Q  106 a 106  Q
    |    
T  721419 a 721419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 106
Target Start/End: Original strand, 45847156 - 45847232
Alignment:
Q  30 aagatgtttgaattactgttccatctcctcttatattaaaatatacattttattctcctcttattcaaaacatatta 106  Q
    ||||||||||||||||  |||| || |||||||| |||||||||||| |    || |||||||||||||||||||||    
T  45847156 aagatgtttgaattacacttccctcccctcttatgttaaaatatacaatcccctcccctcttattcaaaacatatta 45847232  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 106
Target Start/End: Original strand, 49702397 - 49702473
Alignment:
Q  30 aagatgtttgaattactgttccatctcctcttatattaaaatatacattttattctcctcttattcaaaacatatta 106  Q
    |||||| |||||||||  |||  || ||||||||||||||||||||| | |  || |||||||||||||||||||||    
T  49702397 aagatgcttgaattacacttctctcccctcttatattaaaatatacaatcttctcccctcttattcaaaacatatta 49702473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 106
Target Start/End: Complemental strand, 55069568 - 55069492
Alignment:
Q  30 aagatgtttgaattactgttccatctcctcttatattaaaatatacattttattctcctcttattcaaaacatatta 106  Q
    |||||||||||||||   |||  ||||||||||| |||||||||||| ||   || |||||||||||||||||||||    
T  55069568 aagatgtttgaattatatttctctctcctcttatgttaaaatatacaattccctcccctcttattcaaaacatatta 55069492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 106
Target Start/End: Original strand, 23308813 - 23308895
Alignment:
Q  24 cccttaaagatgtttgaattactgttccatctcctcttatattaaaatatacattttattctcctcttattcaaaacatatta 106  Q
    |||| ||||||| |||||||||  | || || |||||||  |||||||||||| |||  || |||||||||||||||||||||    
T  23308813 ccctcaaagatgcttgaattacactcccctcccctcttaagttaaaatatacactttcctcccctcttattcaaaacatatta 23308895  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 106
Target Start/End: Original strand, 28464216 - 28464298
Alignment:
Q  24 cccttaaagatgtttgaattactgttccatctcctcttatattaaaatatacattttattctcctcttattcaaaacatatta 106  Q
    |||| ||||||| |||||||||  |||| || |||||||| |||||||||||| ||   || ||| |||||||||||||||||    
T  28464216 ccctcaaagatgcttgaattacacttccctcccctcttatgttaaaatatacacttccatccccttttattcaaaacatatta 28464298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 106
Target Start/End: Original strand, 7796966 - 7797043
Alignment:
Q  29 aaagatgtttgaattactgttccatctcctcttatattaaaatatacattttattctcctcttattcaaaacatatta 106  Q
    ||||||| |||||||||  | || || |||| ||| |||||||||||| ||   ||||||||||||||||||||||||    
T  7796966 aaagatgcttgaattacactcccctcccctcctatgttaaaatatacacttccctctcctcttattcaaaacatatta 7797043  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 106
Target Start/End: Original strand, 16960225 - 16960302
Alignment:
Q  29 aaagatgtttgaattactgttccatctcctcttatattaaaatatacattttattctcctcttattcaaaacatatta 106  Q
    ||||||| |||||||||  |||| || |||||||| |||||||||||| |    || |||||||||||||||||||||    
T  16960225 aaagatgcttgaattacacttccctcccctcttatgttaaaatatacactcccctcccctcttattcaaaacatatta 16960302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 106
Target Start/End: Original strand, 30192529 - 30192606
Alignment:
Q  29 aaagatgtttgaattactgttccatctcctcttatattaaaatatacattttattctcctcttattcaaaacatatta 106  Q
    |||||||||||||||||  |  | || |||||||| |||||||||||| ||   || |||||||||||||||||||||    
T  30192529 aaagatgtttgaattacactctcctcccctcttatgttaaaatatacacttccctcccctcttattcaaaacatatta 30192606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 106
Target Start/End: Complemental strand, 755604 - 755504
Alignment:
Q  6 gtaaattatacttcgtttcccttaaagatgtttgaattactgttccatctcctcttatattaaaatatacattttattctcctcttattcaaaacatatt 105  Q
    |||||||| |||||  | |||| ||||||| ||||||||   | || || ||||||||||||||||||||| ||   |  ||||||||||||||||||||    
T  755604 gtaaattacacttccctcccctcaaagatgcttgaattatactcccctcccctcttatattaaaatatacacttcccttccctcttattcaaaacatatt 755505  T
Q  106 a 106  Q
    |    
T  755504 a 755504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 106
Target Start/End: Complemental strand, 26809108 - 26809024
Alignment:
Q  22 ttcccttaaagatgtttgaattactgttccatctcctcttatattaaaatatacattttattctcctcttattcaaaacatatta 106  Q
    |||||| |||||||||||||||||  | || || | ||| || |||||||||||| ||   || |||||||||||||||||||||    
T  26809108 ttccctcaaagatgtttgaattacactcccctcacatctcatgttaaaatatacacttccctcccctcttattcaaaacatatta 26809024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0368 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0368
Description:

Target: scaffold0368; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 24 - 106
Target Start/End: Original strand, 10608 - 10690
Alignment:
Q  24 cccttaaagatgtttgaattactgttccatctcctcttatattaaaatatacattttattctcctcttattcaaaacatatta 106  Q
    |||| |||||||||||||||||  | ||  | |||||||| |||||||||||||||   || |||||||||||||||||||||    
T  10608 ccctcaaagatgtttgaattacactccccgcccctcttatgttaaaatatacatttccctcccctcttattcaaaacatatta 10690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 106
Target Start/End: Original strand, 12693860 - 12693942
Alignment:
Q  24 cccttaaagatgtttgaattactgttccatctcctcttatattaaaatatacattttattctcctcttattcaaaacatatta 106  Q
    |||| ||||||| |||||||||  |||  ||||||||||| |||||||||||| |    || |||||||||||||||||||||    
T  12693860 ccctcaaagatgcttgaattacacttctctctcctcttatgttaaaatatacactcccctcccctcttattcaaaacatatta 12693942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 106
Target Start/End: Complemental strand, 34794584 - 34794500
Alignment:
Q  22 ttcccttaaagatgtttgaattactgttccatctcctcttatattaaaatatacattttattctcctcttattcaaaacatatta 106  Q
    |||| ||||||||| |||||||||  | || || |||||||| |||||||||||| |||  || | |||| ||||||||||||||    
T  34794584 ttcctttaaagatgcttgaattacactcccctcccctcttatgttaaaatatacactttcctcccatctttttcaaaacatatta 34794500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 106
Target Start/End: Complemental strand, 351963 - 351914
Alignment:
Q  57 ctcttatattaaaatatacattttattctcctcttattcaaaacatatta 106  Q
    ||||||| |||||||||||| |||  || |||||||||||||||||||||    
T  351963 ctcttatgttaaaatatacacttttctcccctcttattcaaaacatatta 351914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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