View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16714_low_4 (Length: 759)
Name: NF16714_low_4
Description: NF16714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16714_low_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 262; Significance: 1e-145; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 262; E-Value: 1e-145
Query Start/End: Original strand, 9 - 372
Target Start/End: Original strand, 28614654 - 28615017
Alignment:
| Q |
9 |
ggagcagagaaggaaggttacnnnnnnngccaaagaggaagaaaatataggaacagcattagaccaaatagagtcactggctctggattttggaaagcaa |
108 |
Q |
| |
|
|||||||| |||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||| |||||||||||||| |||||||||| |
|
|
| T |
28614654 |
ggagcagaaaaggaaggttactttttttgccaaagaggaagaaaatataggaacagcgttaggccaaatagagtgactggctctggattctggaaagcaa |
28614753 |
T |
|
| Q |
109 |
ctggaatagacaaacagatatattcaaatggaggagaaggaaatgattgtgttggactcnnnnnnncacttgtttactaccgtggtagtgccggaaaagg |
208 |
Q |
| |
|
|||||||||||||| || || |||||||||| ||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| |
|
|
| T |
28614754 |
ctggaatagacaaagcaatttactcaaatggagcagaaggaaatgattgtgttggactcaaaaaaacacttgtttactatcgtggtagtgccggaaaagg |
28614853 |
T |
|
| Q |
209 |
taccaaaactgattggatgatgcatgagtttcgtcttccatcaaacattgatgccaaaacaaacatttcctatcctaagaatgttgctgattatgctcat |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28614854 |
caccaaaactgattggatgatgcatgagtttcgtcttccatcaaacattgatgccaaaacaaacatttcctatcctaagaatgttgctgattatgctcat |
28614953 |
T |
|
| Q |
309 |
gaagctgtaagtaacgtacataagacctaccaaatttttacaaatttttatgcgacaatatttg |
372 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
28614954 |
gaagctgtaagtaacttacataagacctaccaaatttttacaaatttttatgctacaatatttg |
28615017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 380 - 694
Target Start/End: Original strand, 28615072 - 28615375
Alignment:
| Q |
380 |
tatgaggggttcatattagatttagatacgatcatgaccggataatgtgttatatgtgagagttatccctcaccttatcaataggttttatagtttgaaa |
479 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28615072 |
tatgagggtttcatattagatttagatatgat---gaccggataatgtgttatatgtgagagttatccctcaccttatcaataggttttatagtttgaaa |
28615168 |
T |
|
| Q |
480 |
ctcaagttatgctatagatatcctaagtctgatgtatgatgtaacgattgagaatctcgaatttgataagatatatctgacctaaaaattacatacctta |
579 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |
|
|
| T |
28615169 |
ctcaagttatgctatagatatcctaagtctgatgta-------acgattgagaatctcgaatttgataagatatatctgacctgaaaattacatacccta |
28615261 |
T |
|
| Q |
580 |
aattttgagagcgattttaatgcatcacttattttaccattaaatttagttactaaactttattgttttctcttggtagtgagaaaaatatttgtgtgca |
679 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28615262 |
aattttgagagcgattt-aatgcatcacttattttaccattaaatttagtttctaaactttattgttttctcttggtagtgagaaaaatatttgtgtgca |
28615360 |
T |
|
| Q |
680 |
tttatttaatcactt |
694 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
28615361 |
tttatttaatcactt |
28615375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 8 - 323
Target Start/End: Original strand, 28629178 - 28629493
Alignment:
| Q |
8 |
aggagcagagaaggaaggttacnnnnnnngccaaagaggaagaaaatataggaacagcattagaccaaatagagtcactggctctggattttggaaagca |
107 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
28629178 |
aggagcagagaaggaaggttactttttttgccaaagaggaagaaaatataggaacagcgttagaccaaatagagtgactggctctggattctggaaagca |
28629277 |
T |
|
| Q |
108 |
actggaatagacaaacagatatattcaaatggaggagaaggaaatgattgtgttggactcnnnnnnncacttgtttactaccgtggtagtgccggaaaag |
207 |
Q |
| |
|
||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||| || |||||||||||||||| |
|
|
| T |
28629278 |
actggaatagacaaagcaatatactcaaatggagcagaaggaaatgattgtgttggactcaaaaaaacacttgtttactatcgcggtagtgccggaaaag |
28629377 |
T |
|
| Q |
208 |
gtaccaaaactgattggatgatgcatgagtttcgtcttccatcaaacattgatgccaaaacaaacatttcctatcctaagaatgttgctgattatgctca |
307 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
28629378 |
gcaccaaaactgattggatgatgcatgagtttcgtcttccatcaaacattgatgccaaaacaaacatttcctatcctaggaatgatgctgattatgctca |
28629477 |
T |
|
| Q |
308 |
tgaagctgtaagtaac |
323 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
28629478 |
tgaagctgtaagtaac |
28629493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 41 - 106
Target Start/End: Original strand, 39633497 - 39633562
Alignment:
| Q |
41 |
aagaggaagaaaatataggaacagcattagaccaaatagagtcactggctctggattttggaaagc |
106 |
Q |
| |
|
||||||||||||||||||||||||||| || || |||||||| || || ||||||||||||||||| |
|
|
| T |
39633497 |
aagaggaagaaaatataggaacagcataaggcctaatagagtgacaggatctggattttggaaagc |
39633562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 180 - 244
Target Start/End: Original strand, 39633633 - 39633697
Alignment:
| Q |
180 |
gtttactaccgtggtagtgccggaaaaggtaccaaaactgattggatgatgcatgagtttcgtct |
244 |
Q |
| |
|
||||| |||||||| ||||| || ||||| |||||||||||||||||||||||||| |||||||| |
|
|
| T |
39633633 |
gtttattaccgtggaagtgcagggaaaggcaccaaaactgattggatgatgcatgaatttcgtct |
39633697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University