View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16714_low_5 (Length: 597)

Name: NF16714_low_5
Description: NF16714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16714_low_5
NF16714_low_5
[»] chr4 (7 HSPs)
chr4 (183-492)||(42998429-42998738)
chr4 (183-492)||(42999022-42999331)
chr4 (19-100)||(42996181-42996261)
chr4 (94-165)||(42998332-42998403)
chr4 (94-165)||(42998925-42998996)
chr4 (395-492)||(50232993-50233090)
chr4 (382-492)||(43605582-43605691)
[»] chr5 (4 HSPs)
chr5 (271-491)||(21654547-21654767)
chr5 (356-492)||(29632558-29632694)
chr5 (395-491)||(21012013-21012109)
chr5 (382-423)||(10641659-10641700)
[»] chr2 (7 HSPs)
chr2 (19-110)||(27354945-27355036)
chr2 (490-580)||(45414751-45414841)
chr2 (355-491)||(13067119-13067255)
chr2 (390-490)||(15930901-15931001)
chr2 (395-492)||(40915477-40915574)
chr2 (439-492)||(4814602-4814654)
chr2 (439-492)||(9059899-9059951)
[»] chr8 (1 HSPs)
chr8 (382-489)||(5242660-5242766)
[»] chr1 (3 HSPs)
chr1 (355-489)||(48538558-48538692)
chr1 (382-490)||(39179965-39180073)
chr1 (395-492)||(24535404-24535501)
[»] scaffold0421 (1 HSPs)
scaffold0421 (390-491)||(4569-4670)
[»] chr7 (3 HSPs)
chr7 (382-492)||(18478629-18478739)
chr7 (402-492)||(18418404-18418494)
chr7 (438-492)||(23485479-23485532)
[»] chr6 (4 HSPs)
chr6 (382-493)||(7015463-7015574)
chr6 (382-488)||(5169674-5169780)
chr6 (462-490)||(907778-907806)
chr6 (439-487)||(8609491-8609539)
[»] chr3 (12 HSPs)
chr3 (395-491)||(32793231-32793327)
chr3 (395-491)||(50833604-50833700)
chr3 (395-491)||(50842153-50842249)
chr3 (439-492)||(50833759-50833812)
chr3 (439-492)||(50833824-50833877)
chr3 (439-492)||(50841976-50842029)
chr3 (439-492)||(50842041-50842094)
chr3 (374-486)||(16980972-16981083)
chr3 (33-88)||(16981455-16981509)
chr3 (382-491)||(40166578-40166686)
chr3 (439-488)||(50717211-50717259)
chr3 (439-488)||(50795589-50795637)
[»] scaffold0246 (1 HSPs)
scaffold0246 (437-487)||(11383-11433)


Alignment Details
Target: chr4 (Bit Score: 245; Significance: 1e-135; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 183 - 492
Target Start/End: Original strand, 42998429 - 42998738
Alignment:
Q  183 agcagagtggatgggaaaaccattgcacatgtgtgggaaacccnnnnnnnttctgagtggagagctttctgttttccatgcggcatatcaagagttgaaa 282  Q
    ||||||||||||||||||||||||||||||||||||||| ||        ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42998429 agcagagtggatgggaaaaccattgcacatgtgtgggaagccgaaaaaaattctgagtggagagctttctgttttccatgcggcatatcaagagttgaaa 42998528  T
Q  283 tttaatgcgattcattatataaaaaatttaacaaaatagcacgttatataatgttctgattgctgacatcaagatttttcaaattcatctggtggaatat 382  Q
    |||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  42998529 tttaatgcgattcattgtatcaaaaatttaacaaaatggcacgttatataatgttctgattgctgacatcaagatttttcaaattcatgtggtggaatat 42998628  T
Q  383 agagggaattttttagggttaacactaacaacaattaatgcataagatttaaaaggaaatttttagagttaagtgtttgcagacctaataacattaagga 482  Q
     ||||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||||||    
T  42998629 ggagggaagtttttagggttaacactaacaacaattaatgcataagatttagagggaaatttttagggttaagtgtttgcagacctaataacattaagga 42998728  T
Q  483 gtaagggata 492  Q
    ||||||||||    
T  42998729 gtaagggata 42998738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 183 - 492
Target Start/End: Original strand, 42999022 - 42999331
Alignment:
Q  183 agcagagtggatgggaaaaccattgcacatgtgtgggaaacccnnnnnnnttctgagtggagagctttctgttttccatgcggcatatcaagagttgaaa 282  Q
    ||||||||||||||||||||||||| || |||||||||| ||        ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42999022 agcagagtggatgggaaaaccattgaacgtgtgtgggaagccgaaaaaaattctgagtggagagctttctgttttccatgcggcatatcaagagttgaaa 42999121  T
Q  283 tttaatgcgattcattatataaaaaatttaacaaaatagcacgttatataatgttctgattgctgacatcaagatttttcaaattcatctggtggaatat 382  Q
    |||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  42999122 tttaatgcgattcattgtatcaaaaatttaacaaaatggcacgttatataatgttctgattgctgacatcaagatttttcaaattcatgtggtggaatat 42999221  T
Q  383 agagggaattttttagggttaacactaacaacaattaatgcataagatttaaaaggaaatttttagagttaagtgtttgcagacctaataacattaagga 482  Q
     ||||||| ||||||||||||||||||||| |||||||||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||||||    
T  42999222 ggagggaagtttttagggttaacactaacagcaattaatgcataagatttagagggaaatttttagggttaagtgtttgcagacctaataacattaagga 42999321  T
Q  483 gtaagggata 492  Q
    ||||||||||    
T  42999322 gtaagggata 42999331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 19 - 100
Target Start/End: Original strand, 42996181 - 42996261
Alignment:
Q  19 acactccgatccaaatgaaagctaaacttgtttttaccggtaaatgcatggtaggacaacaacgtttcaacgttggatcttg 100  Q
    |||||||||||||| |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  42996181 acactccgatccaa-tgaaagttaaacttgtttttaccggtaagtgcatggtaggacaacaacgtttcaacgttggatcttg 42996261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 94 - 165
Target Start/End: Original strand, 42998332 - 42998403
Alignment:
Q  94 gatcttgacattttttgttgatcttagcaatttacggtgaattccaacaactaggatgatatgaacaccaac 165  Q
    |||||||||||||||||||||||||| |||||||| ||||||||||||||| || |||||||||||||||||    
T  42998332 gatcttgacattttttgttgatcttaacaatttacagtgaattccaacaaccagaatgatatgaacaccaac 42998403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 94 - 165
Target Start/End: Original strand, 42998925 - 42998996
Alignment:
Q  94 gatcttgacattttttgttgatcttagcaatttacggtgaattccaacaactaggatgatatgaacaccaac 165  Q
    |||||||||||||||||||||||||| |||||||  ||||||||||||||| || |||||||||||||||||    
T  42998925 gatcttgacattttttgttgatcttaacaatttatagtgaattccaacaaccagaatgatatgaacaccaac 42998996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 395 - 492
Target Start/End: Original strand, 50232993 - 50233090
Alignment:
Q  395 ttagggttaacactaacaacaattaatgcataagatttaaaaggaaatttttagagttaagtgtttgcagacctaataacattaaggagtaagggata 492  Q
    ||||||||||||||||||||||||||| ||  |  || |    ||||||||||| |||||||| ||||  ||||||||||||||||||||||||||||    
T  50232993 ttagggttaacactaacaacaattaatacaacattttgagcgagaaatttttagggttaagtgattgctaacctaataacattaaggagtaagggata 50233090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 382 - 492
Target Start/End: Original strand, 43605582 - 43605691
Alignment:
Q  382 tagagggaattttttagggttaacactaacaacaattaatgcataagatttaaaaggaaatttttagagttaagtgtttgcagacctaataacattaagg 481  Q
    ||||||||| ||||||||| || |||| | | |||||||||||  |||||| ||   |||||||||| ||||| |||||||| |||||||||||||||||    
T  43605582 tagagggaaatttttagggcta-cacttagagcaattaatgcagcagatttgaagccaaatttttagggttaattgtttgcaaacctaataacattaagg 43605680  T
Q  482 agtaagggata 492  Q
    || ||| ||||    
T  43605681 aggaagagata 43605691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 145; Significance: 5e-76; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 271 - 491
Target Start/End: Complemental strand, 21654767 - 21654547
Alignment:
Q  271 caagagttgaaatttaatgcgattcattatataaaaaatttaacaaaatagcacgttatataatgttctgattgctgacatcaagatttttcaaattcat 370  Q
    |||||| ||||||||||||| ||||||| ||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21654767 caagaggtgaaatttaatgcaattcattgtatcacaaatttaacaaaatggcacgttatataatgttctgattgctgacatcaagatttttcaaattcat 21654668  T
Q  371 ctggtggaatatagagggaattttttagggttaacactaacaacaattaatgcataagatttaaaaggaaatttttagagttaagtgtttgcagacctaa 470  Q
     ||||||||||| ||||||| |||||||||||||||||||||| ||||||||||| ||||||| | |||||  | ||| ||| |||||||||| ||||||    
T  21654667 gtggtggaatatggagggaagtttttagggttaacactaacaataattaatgcatcagatttagagggaaaaatgtagggtttagtgtttgcacacctaa 21654568  T
Q  471 taacattaaggagtaagggat 491  Q
    |||||||||||||||||||||    
T  21654567 taacattaaggagtaagggat 21654547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 356 - 492
Target Start/End: Original strand, 29632558 - 29632694
Alignment:
Q  356 atttttcaaattcatctggtggaatatagagggaattttttagggttaacactaacaacaattaatgcataagatttaaaaggaaatttttagagttaag 455  Q
    |||||| |||||||  | || |||| |||||| ||||||||||||| ||||||||||||||||||||||| ||||||| | |||||||||||| ||||||    
T  29632558 atttttgaaattcaaatagtagaatttagaggaaattttttagggtcaacactaacaacaattaatgcattagatttagagggaaatttttagggttaag 29632657  T
Q  456 tgtttgcagacctaataacattaaggagtaagggata 492  Q
    |||||||| ||||||||||||||||||||||||||||    
T  29632658 tgtttgcaaacctaataacattaaggagtaagggata 29632694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 395 - 491
Target Start/End: Original strand, 21012013 - 21012109
Alignment:
Q  395 ttagggttaacactaacaacaattaatgcataagatttaaaaggaaatttttagagttaagtgtttgcagacctaataacattaaggagtaagggat 491  Q
    ||||||||||||||||||||||||||| ||  |  || | | |||||||||||| |||||||| ||||  |||||||||||||||||||||||||||    
T  21012013 ttagggttaacactaacaacaattaatacaacattttgagagggaaatttttagggttaagtgattgctaacctaataacattaaggagtaagggat 21012109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 423
Target Start/End: Original strand, 10641659 - 10641700
Alignment:
Q  382 tagagggaattttttagggttaacactaacaacaattaatgc 423  Q
    ||||||||||||| |||||||| ||||||||||| |||||||    
T  10641659 tagagggaattttctagggttatcactaacaacatttaatgc 10641700  T

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Target: chr2 (Bit Score: 92; Significance: 2e-44; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 19 - 110
Target Start/End: Original strand, 27354945 - 27355036
Alignment:
Q  19 acactccgatccaaatgaaagctaaacttgtttttaccggtaaatgcatggtaggacaacaacgtttcaacgttggatcttgacattttttg 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27354945 acactccgatccaaatgaaagctaaacttgtttttaccggtaaatgcatggtaggacaacaacgtttcaacgttggatcttgacattttttg 27355036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 490 - 580
Target Start/End: Complemental strand, 45414841 - 45414751
Alignment:
Q  490 atacattcgtatgtcacgatgaaagcaccactgctccaaatgacacataatatatgcggtgtatgagttaaaagaggaaggaccacaatac 580  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  45414841 atacattcgtatgtcacgatgaaagcaccactgctccaaatgacacataatatatgcggtgtatgagttaaaagagaaaggaccacaatac 45414751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 355 - 491
Target Start/End: Original strand, 13067119 - 13067255
Alignment:
Q  355 gatttttcaaattcatctggtggaatatagagggaattttttagggttaacactaacaacaattaatgcataagatttaaaaggaaatttttagagttaa 454  Q
    ||||||| |||||||| ||||||||||| ||  ||||||||||||||||| ||||||  ||||||||| |  || |||| | |||||||||||| |||||    
T  13067119 gatttttgaaattcatttggtggaatattgaaagaattttttagggttaatactaacggcaattaatgaaccagttttagagggaaatttttagggttaa 13067218  T
Q  455 gtgtttgcagacctaataacattaaggagtaagggat 491  Q
    ||| ||||  |||||||||||||||||||||||||||    
T  13067219 gtgattgctaacctaataacattaaggagtaagggat 13067255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 390 - 490
Target Start/End: Original strand, 15930901 - 15931001
Alignment:
Q  390 attttttagggttaacactaacaacaattaatgcataagatttaaaaggaaatttttagagttaagtgtttgcagacctaataacattaaggagtaaggg 489  Q
    |||||||||||||| |||||| ||||||||||||||  | |||| | |||||||||||| ||||| |||||||| |||||||||||||||||| ||||||    
T  15930901 attttttagggttagcactaagaacaattaatgcattggttttagagggaaatttttagggttaaatgtttgcaaacctaataacattaaggaataaggg 15931000  T
Q  490 a 490  Q
    |    
T  15931001 a 15931001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 395 - 492
Target Start/End: Original strand, 40915477 - 40915574
Alignment:
Q  395 ttagggttaacactaacaacaattaatgcataagatttaaaaggaaatttttagagttaagtgtttgcagacctaataacattaaggagtaagggata 492  Q
    ||||||||||||||||||||||||||| ||  |  || | | |||| ||||||| |||||||| ||||  |||||| |||||||||||||||||||||    
T  40915477 ttagggttaacactaacaacaattaatacaacattttgagagggaattttttagggttaagtgattgctaacctaacaacattaaggagtaagggata 40915574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 439 - 492
Target Start/End: Complemental strand, 4814654 - 4814602
Alignment:
Q  439 aaatttttagagttaagtgtttgcagacctaataacattaaggagtaagggata 492  Q
    |||| ||||| |||||||||||||| ||||||||| ||||||||||||||||||    
T  4814654 aaatctttagggttaagtgtttgca-acctaataaaattaaggagtaagggata 4814602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 439 - 492
Target Start/End: Original strand, 9059899 - 9059951
Alignment:
Q  439 aaatttttagagttaagtgtttgcagacctaataacattaaggagtaagggata 492  Q
    |||||||||| |||||||  ||||| ||||||||| ||||||||||||||||||    
T  9059899 aaatttttagggttaagttgttgca-acctaataagattaaggagtaagggata 9059951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 4e-30; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 382 - 489
Target Start/End: Original strand, 5242660 - 5242766
Alignment:
Q  382 tagagggaattttttagggttaacactaacaacaattaatgcataagatttaaaaggaaatttttagagttaagtgtttgcagacctaataacattaagg 481  Q
    ||||||||||||||||||| || || |||||||||||||||||  ||||||| | |||||||||||| |||||||||||||| |||||||||||||||||    
T  5242660 tagagggaattttttagggcta-caataacaacaattaatgcaatagatttagagggaaatttttagggttaagtgtttgcaaacctaataacattaagg 5242758  T
Q  482 agtaaggg 489  Q
    ||||||||    
T  5242759 agtaaggg 5242766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 2e-29; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 355 - 489
Target Start/End: Complemental strand, 48538692 - 48538558
Alignment:
Q  355 gatttttcaaattcatctggtggaatatagagggaattttttagggttaacactaacaacaattaatgcataagatttaaaaggaaatttttagagttaa 454  Q
    ||||||| |||||||| ||||||||||| ||  ||||||||||||||||||||||||  ||||||||| |  || |||| | |||||||||||| |||||    
T  48538692 gatttttgaaattcatttggtggaatattgaaagaattttttagggttaacactaacggcaattaatgaaacagttttagagggaaatttttagggttaa 48538593  T
Q  455 gtgtttgcagacctaataacattaaggagtaaggg 489  Q
    ||| ||||  |||||||||||||||||||||||||    
T  48538592 gtgattgctaacctaataacattaaggagtaaggg 48538558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 382 - 490
Target Start/End: Complemental strand, 39180073 - 39179965
Alignment:
Q  382 tagagggaattttttagggttaacactaacaacaattaatgcataagatttaaaaggaaatttttagagttaagtgtttgcagacctaataacattaagg 481  Q
    |||||||||||||||||||||| ||| ||||||| |||||||| |||||||| | ||||||| |||| ||| |||| ||||| |||||||||||||||||    
T  39180073 tagagggaattttttagggttatcaccaacaacatttaatgcaaaagatttagagggaaattattagggtttagtggttgcaaacctaataacattaagg 39179974  T
Q  482 agtaaggga 490  Q
    |||||||||    
T  39179973 agtaaggga 39179965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 395 - 492
Target Start/End: Original strand, 24535404 - 24535501
Alignment:
Q  395 ttagggttaacactaacaacaattaatgcataagatttaaaaggaaatttttagagttaagtgtttgcagacctaataacattaaggagtaagggata 492  Q
    ||||||||||||||||||||||||||| ||  |  || | | |||||||||| | |||||||| ||||  ||||||||||||||||||||||||||||    
T  24535404 ttagggttaacactaacaacaattaatacaacattttgagagggaaattttttgggttaagtgattgctaacctaataacattaaggagtaagggata 24535501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0421 (Bit Score: 66; Significance: 7e-29; HSPs: 1)
Name: scaffold0421
Description:

Target: scaffold0421; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 390 - 491
Target Start/End: Complemental strand, 4670 - 4569
Alignment:
Q  390 attttttagggttaacactaacaacaattaatgcataagatttaaaaggaaatttttagagttaagtgtttgcagacctaataacattaaggagtaaggg 489  Q
    |||||||||||||| |||||| ||||||||||||||  | |||| | ||||||||||||||||||||||||||| |||||||||||||||||| ||||||    
T  4670 attttttagggttagcactaagaacaattaatgcattggttttagagggaaatttttagagttaagtgtttgcaaacctaataacattaaggaataaggg 4571  T
Q  490 at 491  Q
    ||    
T  4570 at 4569  T

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Target: chr7 (Bit Score: 55; Significance: 3e-22; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 382 - 492
Target Start/End: Complemental strand, 18478739 - 18478629
Alignment:
Q  382 tagagggaattttttagggttaacactaacaacaattaatgcataagatttaaaaggaaatttttagagttaagtgtttgcagacctaataacattaagg 481  Q
    ||||||||||||| |||||||| ||| ||||||| ||||||||  ||||||| | ||||||| |||| ||| |||  ||||| |||||||||||||||||    
T  18478739 tagagggaattttctagggttatcaccaacaacatttaatgcaatagatttagagggaaattattagggtttagtagttgcaaacctaataacattaagg 18478640  T
Q  482 agtaagggata 492  Q
    |||||||||||    
T  18478639 agtaagggata 18478629  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 402 - 492
Target Start/End: Original strand, 18418404 - 18418494
Alignment:
Q  402 taacactaacaacaattaatgcataagatttaaaaggaaatttttagagttaagtgtttgcagacctaataacattaaggagtaagggata 492  Q
    |||||||||||||||||||| ||  |  || | | |||||||||||| |||||||| ||||  |||||| |||||||||||||||||||||    
T  18418404 taacactaacaacaattaatacaacattttgagagggaaatttttagggttaagtgattgctaacctaacaacattaaggagtaagggata 18418494  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 438 - 492
Target Start/End: Complemental strand, 23485532 - 23485479
Alignment:
Q  438 gaaatttttagagttaagtgtttgcagacctaataacattaaggagtaagggata 492  Q
    ||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||    
T  23485532 gaaatttttagggttaagtgtttgca-acctaataaaattaaggagtaagggata 23485479  T

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Target: chr6 (Bit Score: 52; Significance: 2e-20; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 382 - 493
Target Start/End: Complemental strand, 7015574 - 7015463
Alignment:
Q  382 tagagggaattttttagggttaacactaacaacaattaatgcataagatttaaaaggaaatttttagagttaagtgtttgcagacctaataacattaagg 481  Q
    |||||| ||||||||||| ||| ||||||||||| ||||| ||  ||||||| | ||||||  |||| ||| |||| ||||| |||||||||||||||||    
T  7015574 tagaggaaattttttaggattatcactaacaacatttaatacaatagatttagagggaaataattagggtttagtggttgcaaacctaataacattaagg 7015475  T
Q  482 agtaagggatac 493  Q
    ||||||||||||    
T  7015474 agtaagggatac 7015463  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 382 - 488
Target Start/End: Complemental strand, 5169780 - 5169674
Alignment:
Q  382 tagagggaattttttagggttaacactaacaacaattaatgcataagatttaaaaggaaatttttagagttaagtgtttgcagacctaataacattaagg 481  Q
    |||||| |||||| |||||||| |||| |||||  ||||||||  ||||||| | ||||||| |||| ||| |||| ||||| ||||||||| |||||||    
T  5169780 tagaggaaattttctagggttatcactgacaacgtttaatgcaatagatttagagggaaattattagggtttagtggttgcaaacctaataatattaagg 5169681  T
Q  482 agtaagg 488  Q
    |||||||    
T  5169680 agtaagg 5169674  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 462 - 490
Target Start/End: Original strand, 907778 - 907806
Alignment:
Q  462 cagacctaataacattaaggagtaaggga 490  Q
    |||||||||||||||||||||||||||||    
T  907778 cagacctaataacattaaggagtaaggga 907806  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 439 - 487
Target Start/End: Original strand, 8609491 - 8609539
Alignment:
Q  439 aaatttttagagttaagtgtttgcagacctaataacattaaggagtaag 487  Q
    |||||| ||| ||||| ||| |||||||||||||| |||||||||||||    
T  8609491 aaatttctagggttaattgtatgcagacctaataagattaaggagtaag 8609539  T

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Target: chr3 (Bit Score: 49; Significance: 1e-18; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 395 - 491
Target Start/End: Original strand, 32793231 - 32793327
Alignment:
Q  395 ttagggttaacactaacaacaattaatgcataagatttaaaaggaaatttttagagttaagtgtttgcagacctaataacattaaggagtaagggat 491  Q
    ||||||||||||||||||||||||||| ||  |  || | | |||||||||||| |||||||| ||||  |||||||||||||||||||||||||||    
T  32793231 ttagggttaacactaacaacaattaatacaacattttgagagggaaatttttagggttaagtgattgctaacctaataacattaaggagtaagggat 32793327  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 395 - 491
Target Start/End: Original strand, 50833604 - 50833700
Alignment:
Q  395 ttagggttaacactaacaacaattaatgcataagatttaaaaggaaatttttagagttaagtgtttgcagacctaataacattaaggagtaagggat 491  Q
    ||||||||||||||||||||||||||| ||  |  || | |  ||||||||||| |||||||| ||||  |||||||||||||||||||||||||||    
T  50833604 ttagggttaacactaacaacaattaatacaacattttgagagagaaatttttagggttaagtgattgctaacctaataacattaaggagtaagggat 50833700  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 395 - 491
Target Start/End: Complemental strand, 50842249 - 50842153
Alignment:
Q  395 ttagggttaacactaacaacaattaatgcataagatttaaaaggaaatttttagagttaagtgtttgcagacctaataacattaaggagtaagggat 491  Q
    ||||||||||||||||||||||||||| ||  |  || | |  ||||||||||| |||||||| ||||  |||||||||||||||||||||||||||    
T  50842249 ttagggttaacactaacaacaattaatacaacattttgagagagaaatttttagggttaagtgattgctaacctaataacattaaggagtaagggat 50842153  T

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Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 439 - 492
Target Start/End: Complemental strand, 50833812 - 50833759
Alignment:
Q  439 aaatttttagagttaagtgtttgcagacctaataacattaaggagtaagggata 492  Q
    |||||||||| |||||||||||||| ||||||||||||||| ||||||||||||    
T  50833812 aaatttttagggttaagtgtttgcaaacctaataacattaaagagtaagggata 50833759  T

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Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 439 - 492
Target Start/End: Complemental strand, 50833877 - 50833824
Alignment:
Q  439 aaatttttagagttaagtgtttgcagacctaataacattaaggagtaagggata 492  Q
    |||||||||| |||||||||||||| ||||||||||||||| ||||||||||||    
T  50833877 aaatttttagggttaagtgtttgcaaacctaataacattaacgagtaagggata 50833824  T

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Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 439 - 492
Target Start/End: Original strand, 50841976 - 50842029
Alignment:
Q  439 aaatttttagagttaagtgtttgcagacctaataacattaaggagtaagggata 492  Q
    |||||||||| |||||||||||||| ||||||||||||||| ||||||||||||    
T  50841976 aaatttttagggttaagtgtttgcaaacctaataacattaacgagtaagggata 50842029  T

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Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 439 - 492
Target Start/End: Original strand, 50842041 - 50842094
Alignment:
Q  439 aaatttttagagttaagtgtttgcagacctaataacattaaggagtaagggata 492  Q
    |||||||||| |||||||||||||| ||||||||||||||| ||||||||||||    
T  50842041 aaatttttagggttaagtgtttgcaaacctaataacattaaagagtaagggata 50842094  T

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Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 374 - 486
Target Start/End: Complemental strand, 16981083 - 16980972
Alignment:
Q  374 gtggaatatagagggaattttttagggttaacactaacaacaattaatgcataagatttaaaaggaaatttttagagttaagtgtttgcagacctaataa 473  Q
    |||||||| |||| |||||||| ||||||||||||||||  | ||||||||| ||||||| |   || ||||||| ||||||   ||||| |||||||||    
T  16981083 gtggaatagagagagaattttt-agggttaacactaacagaagttaatgcatgagatttagagaaaattttttagggttaagcaattgcaaacctaataa 16980985  T
Q  474 cattaaggagtaa 486  Q
    |||||||||||||    
T  16980984 cattaaggagtaa 16980972  T

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Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 33 - 88
Target Start/End: Complemental strand, 16981509 - 16981455
Alignment:
Q  33 atgaaagctaaacttgtttttaccggtaaatgcatggtaggacaacaacgtttcaa 88  Q
    |||||||||||||||||||| ||| || | ||||||||||||||||||||||||||    
T  16981509 atgaaagctaaacttgtttt-accagttagtgcatggtaggacaacaacgtttcaa 16981455  T

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Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 382 - 491
Target Start/End: Original strand, 40166578 - 40166686
Alignment:
Q  382 tagagggaattttttagggttaacactaacaacaattaatgcataagatttaaaaggaaatttttagagttaagtgtttgcagacctaataacattaagg 481  Q
    ||||||||| ||||||||| || || | |||||||||||||||  ||||||  |   |||||| ||| ||| | | ||||||||| ||||||||||||||    
T  40166578 tagagggaaatttttagggcta-caattacaacaattaatgcagcagatttggagccaaatttctagggttgattatttgcagacttaataacattaagg 40166676  T
Q  482 agtaagggat 491  Q
    ||||||||||    
T  40166677 agtaagggat 40166686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 439 - 488
Target Start/End: Complemental strand, 50717259 - 50717211
Alignment:
Q  439 aaatttttagagttaagtgtttgcagacctaataacattaaggagtaagg 488  Q
    |||| |||||||||||||||||||| ||||||||| ||||||||||||||    
T  50717259 aaatctttagagttaagtgtttgca-acctaataaaattaaggagtaagg 50717211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 439 - 488
Target Start/End: Original strand, 50795589 - 50795637
Alignment:
Q  439 aaatttttagagttaagtgtttgcagacctaataacattaaggagtaagg 488  Q
    |||| |||||||||||||||||||| ||||||||| ||||||||||||||    
T  50795589 aaatctttagagttaagtgtttgca-acctaataaaattaaggagtaagg 50795637  T

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Target: scaffold0246 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 437 - 487
Target Start/End: Complemental strand, 11433 - 11383
Alignment:
Q  437 ggaaatttttagagttaagtgtttgcagacctaataacattaaggagtaag 487  Q
    |||||||||||  |||||||||||| | |||||||||||||||||||||||    
T  11433 ggaaatttttaaggttaagtgtttgaaaacctaataacattaaggagtaag 11383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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