View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16714_low_6 (Length: 580)
Name: NF16714_low_6
Description: NF16714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16714_low_6 |
 | |
|
| [»] scaffold0144 (1 HSPs) |
| | |
|
| [»] scaffold0133 (3 HSPs) |
| | |
|
| [»] scaffold0230 (1 HSPs) |
| | |
|
| [»] scaffold0511 (1 HSPs) |
| | |
|
| [»] scaffold0256 (3 HSPs) |
| | |
|
Alignment Details
Target: scaffold0144 (Bit Score: 441; Significance: 0; HSPs: 1)
Name: scaffold0144
Description:
Target: scaffold0144; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 26 - 569
Target Start/End: Original strand, 37321 - 37864
Alignment:
| Q |
26 |
aaattccaaaactcactttccagtacagaaatccattgatgttcgttgcttgtaaagcacaaactgctacccaatactttagcagcaagaggtgaaccca |
125 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||| | |||| |||||| |||| ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
37321 |
aaattccaaaactcactttccaccacagaaatccattgatgttcatcgcttttaaagcgcaaaaggcttcccaatactttagcagcaagaggtgaaccca |
37420 |
T |
|
| Q |
126 |
cacattttctcactaactttttgcctattgccacaagctctgcacgctcttctctattttctccaaaagcttgttgtttgaacaaagaccagatgtcatc |
225 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||||||| |||||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
37421 |
cacattttctcactaacttttggcctatttccacaagctctgcacgcccttctctatttgctccaaaagcatgttgtttgaacaacgaccagatgtcatc |
37520 |
T |
|
| Q |
226 |
atcaaataactgtgctaaaggatgaaccttagttcccatgatggatgcaacaatctcaagtctggtagtgaccaaaattgatgcacctttctttccaagt |
325 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
37521 |
atcagataactgtgctaaaggatgaaccttagttcccatgatggatgcaacaatctgaagtctggtagtgaccaatattgatgcacctttctttccaagt |
37620 |
T |
|
| Q |
326 |
tgcaacaaagactttaacttattccatttctcttggtcttcactccaaacatcatcaagaacaagcaaataccttttgttttgcaaaatatcttgaaccn |
425 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37621 |
tgcaacaaagactttaacttattccatttctcttggtcttcactccaaacatcatcaagaacaagcaaataccttttgttttgcaaaatatcttgaacct |
37720 |
T |
|
| Q |
426 |
nnnnnnnncttgactctaaagacaagagatctaggttttttccaatggtgttttctaggatggactctaaaattttcatcaaactgaaatcatccgaaac |
525 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37721 |
tttttttccttgactctaaagacaagagatctaggttttttccaatggtgttttctatgatggactctaaaattttcatcaaactgaaatcatccgaaac |
37820 |
T |
|
| Q |
526 |
acacacccatattttcaagtcaaaatgtgtttttaccctttcat |
569 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37821 |
acacacccatattttcaagtcaaaatgtgtttttaccctttcat |
37864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 433; Significance: 0; HSPs: 14)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 26 - 569
Target Start/End: Original strand, 16657843 - 16658386
Alignment:
| Q |
26 |
aaattccaaaactcactttccagtacagaaatccattgatgttcgttgcttgtaaagcacaaactgctacccaatactttagcagcaagaggtgaaccca |
125 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||| | |||| |||||| ||| ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
16657843 |
aaattccaaaactcactttccaccacagaaatccattgatgttcatcgcttttaaagcgtaaaaggcttcccaatactttagcagcaagaggtgaaccca |
16657942 |
T |
|
| Q |
126 |
cacattttctcactaactttttgcctattgccacaagctctgcacgctcttctctattttctccaaaagcttgttgtttgaacaaagaccagatgtcatc |
225 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||||||| ||||||||| ||||||||||| |||||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
16657943 |
cacattttctcactaacttttggcctatttccacaagatctgcacgcccttctctatttgctccaaaagcatgttgtttgaacaacgaccagatgtcatc |
16658042 |
T |
|
| Q |
226 |
atcaaataactgtgctaaaggatgaaccttagttcccatgatggatgcaacaatctcaagtctggtagtgaccaaaattgatgcacctttctttccaagt |
325 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16658043 |
atcagataactgtgctaaaggatgaaccttagttcccatgatggatgcaacaatctcaagtctggtagtgaccaaaattgatgcacctttctttccaagt |
16658142 |
T |
|
| Q |
326 |
tgcaacaaagactttaacttattccatttctcttggtcttcactccaaacatcatcaagaacaagcaaataccttttgttttgcaaaatatcttgaaccn |
425 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16658143 |
tgcaacaaagactttaacttattccatttctcttggtcttcactccaaacatcatcaagaacaagcaaataccttttgttttgcaaaatatcttgaacct |
16658242 |
T |
|
| Q |
426 |
nnnnnnnncttgactctaaagacaagagatctaggttttttccaatggtgttttctaggatggactctaaaattttcatcaaactgaaatcatccgaaac |
525 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
16658243 |
tttttttccttgactctaaagacaagagatctaggttttttccaatggtgttttctatgatggactctaaaattttcagtaaactgaaatcatccgaaac |
16658342 |
T |
|
| Q |
526 |
acacacccatattttcaagtcaaaatgtgtttttaccctttcat |
569 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16658343 |
acacacccatattttcaagtcaaaatgtgtttttaccctttcat |
16658386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 1 - 569
Target Start/End: Original strand, 16796975 - 16797543
Alignment:
| Q |
1 |
agacatgatagaatcaacctcaggcaaattccaaaactcactttccagtacagaaatccattgatgttcgttgcttgtaaagcacaaactgctacccaat |
100 |
Q |
| |
|
|||||||||| |||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |||||| |
|
|
| T |
16796975 |
agacatgatacgatcaacctgaggtaaattccaaaattcactttccagtacagaaatccattgatgttcgtcgcttgtaaagcgcaaactgcttcccaat |
16797074 |
T |
|
| Q |
101 |
actttagcagcaagaggtgaacccacacattttctcactaactttttgcctattgccacaagctctgcacgctcttctctattttctccaaaagcttgtt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
16797075 |
actttagcagcaagaggtgaacccacacattttctcactaacttcttgcctattgccacaagctctgcacgctcttctctatttgctccaaaagcttgtt |
16797174 |
T |
|
| Q |
201 |
gtttgaacaaagaccagatgtcatcatcaaataactgtgctaaaggatgaaccttagttcccatgatggatgcaacaatctcaagtctggtagtgaccaa |
300 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| ||| |||| ||||||| | |||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
16797175 |
gtttgaacaaagaccagatgtcatcatcagataaccgtgttaaatgatgaacataagttcccatgatggatgcaacaatgtcaagtctggtagtgaccaa |
16797274 |
T |
|
| Q |
301 |
aattgatgcacctttctttccaagttgcaacaaagactttaacttattccatttctcttggtcttcactccaaacatcatcaagaacaagcaaatacctt |
400 |
Q |
| |
|
|||||||||||||||||||||| | ||||||| ||||| ||| ||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||| |
|
|
| T |
16797275 |
aattgatgcacctttctttccatttggcaacaatgacttgaacgtattccatttcacttggtcatcactccacacatcatcaagaacaagcaaatacctt |
16797374 |
T |
|
| Q |
401 |
ttgttttgcaaaatatcttgaaccnnnnnnnnncttgactctaaagacaagagatctaggttttttccaatggtgttttctaggatggactctaaaattt |
500 |
Q |
| |
|
| |||||||||||| ||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
16797375 |
tggttttgcaaaatttcttgaaccttttttcgcaaggactctaaagacaagagttctagattttttccaatggtgttttctatgatagactctaaaattt |
16797474 |
T |
|
| Q |
501 |
tcatcaaactgaaatcatccgaaacacacacccatattttcaagtcaaaatgtgtttttaccctttcat |
569 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16797475 |
tcatcaaactgaaatcatccgaaacacacacccatattttcaagtcaaaatgtgtttttaccctttcat |
16797543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 26 - 569
Target Start/End: Complemental strand, 16868330 - 16867789
Alignment:
| Q |
26 |
aaattccaaaactcactttccagtacagaaatccattgatgttcgttgcttgtaaagcacaaactgctacccaatactttagcagcaagaggtgaaccca |
125 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||||||||||||| | |||| |||||| |||| ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
16868330 |
aaattccaaaactcactttccaccacagaagtccattgatgttcatcgcttttaaagcgcaaaaggcttcccaatactttagcagcaagaggtgaaccca |
16868231 |
T |
|
| Q |
126 |
cacattttctcactaactttttgcctattgccacaagctctgcacgctcttctctattttctccaaaagcttgttgtttgaacaaagaccagatgtcatc |
225 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||||||| |||||||||| |||||||||||||| || ||||||||||| |
|
|
| T |
16868230 |
cacattttctcactaacttttggcctatttccacaagctctgcacgcccttctctatttgctccaaaagcatgttgtttgaacaacgatcagatgtcatc |
16868131 |
T |
|
| Q |
226 |
atcaaataactgtgctaaaggatgaaccttagttcccatgatggatgcaacaatctcaagtctggtagtgaccaaaattgatgcacctttctttccaagt |
325 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16868130 |
atcagataactgtgctaaaggatgaaccttagttcccatgatggatgcaacaatctcaagtctggtagtgaccaaaattgatgcacctttctttccaagt |
16868031 |
T |
|
| Q |
326 |
tgcaacaaagactttaacttattccatttctcttggtcttcactccaaacatcatcaagaacaagcaaataccttttgttttgcaaaatatcttgaaccn |
425 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |
|
|
| T |
16868030 |
tgcaacaaagactttaacttattccatttctcttggtcttcactccaaacatcatcaagaacaagcaaatactttttgttttgcaaaatttcttgaacct |
16867931 |
T |
|
| Q |
426 |
nnnnnnnncttgactctaaagacaagagatctaggttttttccaatggtgttttctaggatggactctaaaattttcatcaaactgaaatcatccgaaac |
525 |
Q |
| |
|
| |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
16867930 |
tttttctcaaggtttctaaagacaagagatctagattttttccaatggtgttttctgtgatggactctaaaattttcatcaaactgaaatcgtccgaa-- |
16867833 |
T |
|
| Q |
526 |
acacacccatattttcaagtcaaaatgtgtttttaccctttcat |
569 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16867832 |
acacacccatattttcaagtcaaaatgtgtttttaccctttcat |
16867789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 40 - 569
Target Start/End: Original strand, 16837525 - 16838055
Alignment:
| Q |
40 |
actttccagtacagaaatccattgatgttcgttgcttgtaaagcacaaactgctacccaatactttagcagcaagaggtgaacccacacattttctcact |
139 |
Q |
| |
|
|||||||| |||||||||||||||||||| | |||| |||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16837525 |
actttccaccacagaaatccattgatgttcatcgcttttaaagcgcaaaaggcttcccaatactttagcagcaagaggtgaacccacacattttctcact |
16837624 |
T |
|
| Q |
140 |
aactttttgcctattgccacaagctctgcacgctcttctctattttctccaaaagcttgttgtttgaacaaagaccagatgtcatcatcaaataactgtg |
239 |
Q |
| |
|
||||||| ||||||| ||||||||||||||||| ||||||||||| |||||||||| |||||||||||||| |||||||||||||||||| ||||||||| |
|
|
| T |
16837625 |
aacttttggcctatttccacaagctctgcacgcccttctctatttgctccaaaagcatgttgtttgaacaacgaccagatgtcatcatcagataactgtg |
16837724 |
T |
|
| Q |
240 |
ctaaaggatgaaccttagttcccatgatggatgcaacaatctcaagtctggtagtgaccaaaattgatgcacctttctttccaagttgcaacaaagactt |
339 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |
|
|
| T |
16837725 |
ctaaaggatgaaccttagttcccatgatggatgcaacaatctcaagtctggtagtgaccaaaattgatgcacctttctttccatttggcaacaaagactt |
16837824 |
T |
|
| Q |
340 |
taacttattccatttctcttggtcttcactccaaacatcatcaagaacaagcaaataccttttgttttgcaaaatatcttgaaccnnnnnnnnncttgac |
439 |
Q |
| |
|
||| ||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |
|
|
| T |
16837825 |
gaacgtattccatttcacttggtcatcactccacacatcatcaagaacaagcaaataccttttgttttgcaaaatttcttgaaccttttttcgcaaggac |
16837924 |
T |
|
| Q |
440 |
tctaaagacaagagatctag-gttttttccaatggtgttttctaggatggactctaaaattttcatcaaactgaaatcatccgaaacacacacccatatt |
538 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16837925 |
tctaaagacaagagatctagatttttttccaatggtgttttctatgatggactctaaaattttcatcaaactgaaatcatccgaaacacacacccatatt |
16838024 |
T |
|
| Q |
539 |
ttcaagtcaaaatgtgtttttaccctttcat |
569 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
16838025 |
ttcaagtcaaaatgtgtttttaccctttcat |
16838055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 26 - 569
Target Start/End: Original strand, 17069337 - 17069883
Alignment:
| Q |
26 |
aaattccaaaactcactttccagtacagaaatccattgatgttcgttgcttgtaaagcacaaactgctacccaatactttagcagcaagaggtgaaccca |
125 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||| | |||| |||||| |||| ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
17069337 |
aaattccaaaactcactttccaccacagaaatccattgatgttcatcgcttttaaagcgcaaaaggcttcccaatactttagcagcaagaggtgaaccca |
17069436 |
T |
|
| Q |
126 |
cacattttctcactaactttttgcctattgccacaagctctgcacgctcttctctattttctccaaaagcttgttgtttgaacaaagaccagatgtcatc |
225 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||| ||| |||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
17069437 |
cacattttctcactaacttttggcctatttccacaagctctgcacgcccttctctctttgctccaaaagcatgttgtttgaacaaagaccagatgtcatc |
17069536 |
T |
|
| Q |
226 |
atcaaataactgtgctaaaggatg---aaccttagttcccatgatggatgcaacaatctcaagtctggtagtgaccaaaattgatgcacctttctttcca |
322 |
Q |
| |
|
|||| ||||| ||| ||||||||| | | | |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
17069537 |
atcagataaccgtgataaaggatgagcatcatgagttcccatgatggatgcaacaatgtcaagtctggtagtgactaaaattgatgcacctttctttcca |
17069636 |
T |
|
| Q |
323 |
agttgcaacaaagactttaacttattccatttctcttggtcttcactccaaacatcatcaagaacaagcaaataccttttgttttgcaaaatatcttgaa |
422 |
Q |
| |
|
| | ||||||||||| || ||||||||||| ||||||| |||||||| |||||||||||||||||||||||||||||| |||||||||| ||||||| |
|
|
| T |
17069637 |
tttggtaacaaagacttgaagctattccatttcacttggtcatcactccacacatcatcaagaacaagcaaataccttttgctttgcaaaatttcttgaa |
17069736 |
T |
|
| Q |
423 |
ccnnnnnnnnncttgactctaaagacaagagatctaggttttttccaatggtgttttctaggatggactctaaaattttcatcaaactgaaatcatccga |
522 |
Q |
| |
|
|| |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17069737 |
cctttttttgccttgactctaaagacaagagatctagattttttccaatggtgttttctatgatggactctaaaattttcatcaaactgaaatcatccga |
17069836 |
T |
|
| Q |
523 |
aacacacacccatattttcaagtcaaaatgtgtttttaccctttcat |
569 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17069837 |
aacacacacccatattttcaagtcaaaatgtgtttttaccctttcat |
17069883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 569
Target Start/End: Original strand, 16787773 - 16788342
Alignment:
| Q |
1 |
agacatgatagaatcaacctcaggcaaattccaaaactcactttccagtacagaaatccattgatgttcgttgcttgtaaagcacaaactgctacccaat |
100 |
Q |
| |
|
||||||||||| |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||| |||||| |
|
|
| T |
16787773 |
agacatgataggatcatcctcagttaaattccaaaactcactttccagtacagaaatccattgatgttcgtcgcttgtaaatcgcaaactgcttcccaat |
16787872 |
T |
|
| Q |
101 |
actttagcagcaagaggtgaacccacacattttctcactaactttttgcctattgccacaagctctgcacgctcttctctattttctccaaaagcttgtt |
200 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||| |||||||||| |
|
|
| T |
16787873 |
actttagcagcaagagttgaacccacacattttctcactaacttcttgcctatttccacaagctctgcacgttcttctctattttctctgaaagcttgtt |
16787972 |
T |
|
| Q |
201 |
gtttgaacaaagaccagatgtcatcatcaaataactgtgctaaaggatgaac---cttagttcccatgatggatgcaacaatctcaagtctggtagtgac |
297 |
Q |
| |
|
||||||||||||||||||||||| |||| |||| ||| |||| ||||| | | |||| ||||||||||||||||||| ||||||| | |||||| |
|
|
| T |
16787973 |
gtttgaacaaagaccagatgtcagaatcagataagcgtgttaaacgatgagcatgataagttgccatgatggatgcaacaatgtcaagtcgtgcagtgac |
16788072 |
T |
|
| Q |
298 |
caaaattgatgcacctttctttccaagttgcaacaaagactttaacttattccatttctcttggtcttcactccaaacatcatcaagaacaagcaaatac |
397 |
Q |
| |
|
||||||||||||||||||| || || ||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||| | |||| |
|
|
| T |
16788073 |
caaaattgatgcacctttcgtttcatattgcaacaaagacttgaacttattccatttctcttggtcttcattccacacatcatcaagaacaagtagatac |
16788172 |
T |
|
| Q |
398 |
cttttgttttgcaaaatatcttgaaccnnnnnnnnncttgactctaaagacaagagatctaggttttttccaatggtgttttctaggatggactctaaaa |
497 |
Q |
| |
|
||||||||||| ||||| ||||||||| ||||||| ||||| |||||||| | ||||||||||| |||| ||||| || || |||||||| |
|
|
| T |
16788173 |
cttttgttttg-aaaatttcttgaaccttctttcgcattgactccaaagatgagagatctggattttttccaattgtgtcttctatgacgg-ctctaaaa |
16788270 |
T |
|
| Q |
498 |
ttttcatcaaactgaaatcatccgaaacacacacccatattttcaagtcaaaatgtgtttttaccctttcat |
569 |
Q |
| |
|
||||||| ||||||||||| |||||| | | ||||||||||| ||||||||| || |||| ||||||| |
|
|
| T |
16788271 |
ccttcatcatgctgaaatcatctgaaacaaaaatccatattttcaggtcaaaatggtttcttactctttcat |
16788342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 5 - 569
Target Start/End: Original strand, 16987264 - 16987831
Alignment:
| Q |
5 |
atgatagaatcaacctcaggcaaattccaaaactcactttccagtacagaaatccattgatgttcgttgcttgtaaagcacaaactgctacccaatactt |
104 |
Q |
| |
|
||||||| |||| ||||||| |||||||||| ||||||||||||||||||||||||||||||||||| || | ||||||||| |||||||||| |
|
|
| T |
16987264 |
atgataggatcatcctcaggtaaattccaaatctcactttccagtacagaaatccattgatgttcgtcagtttcacgttgcaaactgcttcccaatactt |
16987363 |
T |
|
| Q |
105 |
tagcagcaagaggtgaacccacacattttctcactaactttttgcctattgccacaagctctgcacgctcttctctattttctccaaaagcttgttgttt |
204 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| ||||| || |||||| |||||||||||||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
16987364 |
tagcagcaagaggtgaacccacaaattttctcaccaacttcttacctatttccacaagctctgcacgctcttctccattttctccgaaagcttgttgttt |
16987463 |
T |
|
| Q |
205 |
gaacaaagaccagatgtcatcatcaaataactgtgctaaaggatgaac---cttagttcccatgatggatgcaacaatctcaagtctggtagtgaccaaa |
301 |
Q |
| |
|
||||||||||||||||| ||||||| |||| | ||||||||| | | |||||||||||||||||||||| | ||||||||||| ||||||||| |
|
|
| T |
16987464 |
gaacaaagaccagatgtgatcatcagataagccgaccaaaggatgagcaggataagttcccatgatggatgcaacattgtcaagtctggtggtgaccaaa |
16987563 |
T |
|
| Q |
302 |
attgatgcacctttctttccaagttgcaacaaagactttaacttattccatttctcttggtcttcactccaaacatcatcaagaacaagcaaataccttt |
401 |
Q |
| |
|
| ||||||||||||| ||| | |||||||| |||||| |||||||||||||||||| |||||||| |||| ||||||||||||||||| |||||||||| |
|
|
| T |
16987564 |
actgatgcacctttcgttctattttgcaacacagacttgaacttattccatttctctcggtcttcagtccacacatcatcaagaacaagtaaataccttt |
16987663 |
T |
|
| Q |
402 |
tgttttgcaaaatatcttgaaccnnnnnnnnncttgactctaaagacaagagatctaggttttttccaatggtgttttctaggatggactctaaaatttt |
501 |
Q |
| |
|
||||||| | ||| |||||||| |||||||||||||| |||||| | | ||||||||||| |||||||| | ||| |||||||||| ||| |
|
|
| T |
16987664 |
tgttttgtagaatttcttgaacatttttttgcattgactctaaagacgagagatgtggattttttccaatagtgttttcaatgatcgactctaaaacttt |
16987763 |
T |
|
| Q |
502 |
catcaaactgaaatcatccgaaacacacacccatattttcaagtcaaaatgtgtttttaccctttcat |
569 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
16987764 |
catcatactgaaatcatcagaaacacacacccatattttcaagtcaaaatgtgtctttacactttcat |
16987831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 30 - 569
Target Start/End: Complemental strand, 18873516 - 18872968
Alignment:
| Q |
30 |
tccaaaactcactttccagtacagaaatccattgatgttcgttgcttgtaaagcacaaactgctacccaatactttagcagcaagaggtgaacccacaca |
129 |
Q |
| |
|
||||||||| ||||||| |||||||| |||||||||||| | || |||||| |||| ||| || | |||||| || |||||||| ||||||||||| |
|
|
| T |
18873516 |
tccaaaacttactttcctttacagaaagccattgatgttcctcagttttaaagcgcaaaaggcttcctagtacttttgcggcaagaggagaacccacaca |
18873417 |
T |
|
| Q |
130 |
ttttctcactaactttttgcctattgccacaagctctgcacgctcttctctattttctccaaaagcttgttgtttgaacaaagaccagatgtcatcatca |
229 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||||| |||||| |||||| |||||||| |||||||| |
|
|
| T |
18873416 |
ttttctcactaactccttgcctattgccacaagctctgcacgctcttctctatttgtttcaaaagctttttgtttaaacaaataccagatggcatcatca |
18873317 |
T |
|
| Q |
230 |
aataactgtgctaaaggatgaac---cttagttcccatgatggatgcaacaatctcaagtctggtagtgaccaaaattgatgcacctttc------tttc |
320 |
Q |
| |
|
|||| | ||| ||||| | | |||||||||||| ||||||||||| ||||||||||| |||||||||| ||||||||||||| |||| |
|
|
| T |
18873316 |
gataagcctaacaaatgatgagcaggataagttcccatgattgatgcaacaatgtcaagtctggttgtgaccaaaactgatgcacctttcgtgccatttc |
18873217 |
T |
|
| Q |
321 |
caagttgcaacaaagactttaacttattccatttctcttggtcttcactccaaacatcatcaagaacaagcaaataccttttgttttgcaaaatatcttg |
420 |
Q |
| |
|
|| |||||| ||| |||| |||| |||||||||||||||||||||| |||| ||||||||||||||||| | ||||||||||||||||||||||| || |
|
|
| T |
18873216 |
cacgttgcagaaaatacttgaactgattccatttctcttggtcttcattccacacatcatcaagaacaagtagataccttttgttttgcaaaatattttt |
18873117 |
T |
|
| Q |
421 |
aaccnnnnnnnnncttgactctaaagacaagagatctaggttttttccaatggtgttttctaggatggactctaaaattttcatcaaactgaaatcatcc |
520 |
Q |
| |
|
|||| |||| ||||||||| |||||||| | ||||||||| |||| ||||| |||||||| |||| |||||||| ||| ||||| || |
|
|
| T |
18873116 |
aaccttcttttgcattgattctaaagacgagagatctggattttttccatcggtggattctatgatggactgcaaaactttcatcatactaaaatcctca |
18873017 |
T |
|
| Q |
521 |
gaaacacacacccatattttcaagtcaaaatgtgtttttaccctttcat |
569 |
Q |
| |
|
||||||||||||||||||||||||| ||| ||||| | ||||||||||| |
|
|
| T |
18873016 |
gaaacacacacccatattttcaagttaaagtgtgtatctaccctttcat |
18872968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 30 - 569
Target Start/End: Complemental strand, 18806522 - 18805974
Alignment:
| Q |
30 |
tccaaaactcactttccagtacagaaatccattgatgttcgttgcttgtaaagcacaaactgctacccaatactttagcagcaagaggtgaacccacaca |
129 |
Q |
| |
|
||||||||| ||||||| |||||||| |||||||||||| | || |||||| |||| ||| || | |||||| || |||||||||||||||||||| |
|
|
| T |
18806522 |
tccaaaacttactttcctttacagaaagccattgatgttcctcagttttaaagcgcaaaaggcttcctagtacttttgcggcaagaggtgaacccacaca |
18806423 |
T |
|
| Q |
130 |
ttttctcactaactttttgcctattgccacaagctctgcacgctcttctctattttctccaaaagcttgttgtttgaacaaagaccagatgtcatcatca |
229 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| ||||||||||||||| | ||||||||| |||||| |||||| ||||||| |||||||| |
|
|
| T |
18806422 |
ttttctcactaactccttgcctattgccacaagctctgctcgctcttctctatttgtttcaaaagctttttgtttaaacaaataccagattgcatcatca |
18806323 |
T |
|
| Q |
230 |
aataactgtgctaaaggatgaac---cttagttcccatgatggatgcaacaatctcaagtctggtagtgaccaaaattgatgcacctttc------tttc |
320 |
Q |
| |
|
|||| | ||| ||||| | | |||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||| |||| |
|
|
| T |
18806322 |
gataagcctaacaaatgatgagcaggataagttcccatgattgatgcaacaatgtcaagtctggttgtgaccaaaattgatgcacctttcgtgccatttc |
18806223 |
T |
|
| Q |
321 |
caagttgcaacaaagactttaacttattccatttctcttggtcttcactccaaacatcatcaagaacaagcaaataccttttgttttgcaaaatatcttg |
420 |
Q |
| |
|
|| |||||| ||| |||| |||| |||||||||||||||||||||| |||| ||||||||||||||||| | ||||||||||||||||||||| | ||| |
|
|
| T |
18806222 |
cacgttgcagaaaatacttgaactgattccatttctcttggtcttcattccacacatcatcaagaacaagtagataccttttgttttgcaaaattttttg |
18806123 |
T |
|
| Q |
421 |
aaccnnnnnnnnncttgactctaaagacaagagatctaggttttttccaatggtgttttctaggatggactctaaaattttcatcaaactgaaatcatcc |
520 |
Q |
| |
|
||| |||| ||||||||| |||||||| | ||||||||| || | ||||| |||||||| |||| |||||||| ||| ||||| || |
|
|
| T |
18806122 |
aacttccttttgcattgattctaaagacgagagatctggactttttccaacggcggattctatgatggactgcaaaactttcatcatactaaaatcctca |
18806023 |
T |
|
| Q |
521 |
gaaacacacacccatattttcaagtcaaaatgtgtttttaccctttcat |
569 |
Q |
| |
|
||||||||||||||||||||||||| ||| ||||| | ||||||||||| |
|
|
| T |
18806022 |
gaaacacacacccatattttcaagttaaagtgtgtatctaccctttcat |
18805974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 29 - 316
Target Start/End: Original strand, 16780933 - 16781223
Alignment:
| Q |
29 |
ttccaaaactcactttccagtacagaaatccattgatgttcgttgcttgtaaagcacaaactgctacccaatactttagcagcaagaggtgaacccacac |
128 |
Q |
| |
|
||||||| |||||||||| |||||||| |||||||||||| | || |||||| |||| ||| ||||| || || |||||||| ||||||||||||| |
|
|
| T |
16780933 |
ttccaaagctcactttcctttacagaaagccattgatgttcctcatttttaaagcgcaaaaggcttcccaaaaccttggcagcaagtggtgaacccacac |
16781032 |
T |
|
| Q |
129 |
attttctcactaactttttgcctattgccacaagctctgcacgctcttctctattttctccaaaagcttgttgtttgaacaaagaccagatgtcatcatc |
228 |
Q |
| |
|
||||| |||||| || ||||||||||| ||||||||||| ||||||| | ||| ||||||||| |||||||| || || | ||| ||||| || || |
|
|
| T |
16781033 |
attttatcactatctccttgcctattgctgcaagctctgcaggctcttccccattaggtccaaaagcgtgttgtttaaataatgtccaaatgtcgtcgtc |
16781132 |
T |
|
| Q |
229 |
aaataactgtgctaaaggatgaac---cttagttcccatgatggatgcaacaatctcaagtctggtagtgaccaaaattgatgcacctttc |
316 |
Q |
| |
|
| |||| | | ||| | ||| | | |||||||||||||||||||||||| ||||||| || ||||| ||||| |||| ||||||| |
|
|
| T |
16781133 |
atataaacctaccaaatggtgagcagggtgagttcccatgatggatgcaacaatatcaagtcgtgttgtgactaaaatagatgaacctttc |
16781223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 290 - 424
Target Start/End: Original strand, 16843925 - 16844065
Alignment:
| Q |
290 |
gtagtgaccaaaattgatgcacctttc------tttccaagttgcaacaaagactttaacttattccatttctcttggtcttcactccaaacatcatcaa |
383 |
Q |
| |
|
||||||||||||| |||||||||||| |||||| |||||| |||||| | ||||||| |||||| | |||||||||| |||||||||| |||| |
|
|
| T |
16843925 |
gtagtgaccaaaactgatgcaccttttgttccatttccacattgcaaaaaagacatgaacttatcccatttatgttggtcttcattccaaacatcgtcaa |
16844024 |
T |
|
| Q |
384 |
gaacaagcaaataccttttgttttgcaaaatatcttgaacc |
424 |
Q |
| |
|
| ||||| |||||||||||||||||||||||| ||||||| |
|
|
| T |
16844025 |
ggacaagtaaataccttttgttttgcaaaatagtttgaacc |
16844065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 100 - 220
Target Start/End: Original strand, 16843708 - 16843828
Alignment:
| Q |
100 |
tactttagcagcaagaggtgaacccacacattttctcactaactttttgcctattgccacaagctctgcacgctcttctctattttctccaaaagcttgt |
199 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||||||| |||| || || ||||||| ||||| |||||||| |||||||| | |||||||||| ||| |
|
|
| T |
16843708 |
tactttggcagcaagaggcgaacccacacattttctaactatctccttacctattgttacaaggtctgcacgttcttctctttcagctccaaaagcgtgt |
16843807 |
T |
|
| Q |
200 |
tgtttgaacaaagaccagatg |
220 |
Q |
| |
|
|| |||||||||||||||||| |
|
|
| T |
16843808 |
tgcttgaacaaagaccagatg |
16843828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 509 - 569
Target Start/End: Original strand, 16781422 - 16781482
Alignment:
| Q |
509 |
ctgaaatcatccgaaacacacacccatattttcaagtcaaaatgtgtttttaccctttcat |
569 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||| |||||||| || |||| ||||||| |
|
|
| T |
16781422 |
ctgaaatcatctgaaacacaaacccatattttcaaatcaaaatgggtggttacgctttcat |
16781482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 478 - 569
Target Start/End: Original strand, 16844119 - 16844210
Alignment:
| Q |
478 |
ttctaggatggactctaaaattttcatcaaactgaaatcatccgaaacacacacccatattttcaagtcaaaatgtgtttttaccctttcat |
569 |
Q |
| |
|
||||| ||| |||| ||||| ||||||| ||| |||||||| |||||||| |||||||||||||| |||||| || |||||||| |||| |
|
|
| T |
16844119 |
ttctacgatcgactgcaaaatcttcatcatactaaaatcatcagaaacacaaacccatattttcaaaggaaaatgagtatttaccctctcat |
16844210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133 (Bit Score: 383; Significance: 0; HSPs: 3)
Name: scaffold0133
Description:
Target: scaffold0133; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 1 - 569
Target Start/End: Original strand, 8313 - 8884
Alignment:
| Q |
1 |
agacatgatagaatcaacctcaggcaaattccaaaactcactttccagtacagaaatccattgatgttcgttgcttgtaaagcacaaactgctacccaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
8313 |
agacatgatagaatcaacctcaggcaaattccaaaattcactttccagtacagaaatccattgatgttcgttgcttgtacagcacaaactgctacccaat |
8412 |
T |
|
| Q |
101 |
actttagcagcaagaggtgaacccacacattttctcactaactttttgcctattgccacaagctctgcacgctcttctctattttctccaaaagcttgtt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
8413 |
actttagcagcaagaggtgaacccacacattttctcactaactttttgcctattgccacaagctctgcacgctcttctcgattttctccaaaagcttgtt |
8512 |
T |
|
| Q |
201 |
gtttgaacaaagaccagatgtcatcatcaaataactgtgctaaaggatgaacct---tagttcccatgatggatgcaacaatctcaagtctggtagtgac |
297 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| ||||||| ||||| | | |||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
8513 |
gtttgaacaaagaccagatgtcatcatcagataagcttgctaaatgatgagcatcagaagttcccatgatggatgcaacaatgtcaagtctggtagtgat |
8612 |
T |
|
| Q |
298 |
caaaattgatgcacctttctttccaagttgcaacaaagactttaacttattccatttctcttggtcttcactccaaacatcatcaagaacaagcaaatac |
397 |
Q |
| |
|
||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||| |||| ||||||||||||||||| |||||| |
|
|
| T |
8613 |
caaaattgatgcacctttctttccatttagcaacaaagactttaacttattccatttctctttgtcttcagtccacacatcatcaagaacaagtaaatac |
8712 |
T |
|
| Q |
398 |
cttttgttttgcaaaatatcttgaaccnnnnnnnnncttgactctaaagacaagagatctaggttttttccaatggtgttttctaggatggactctaaaa |
497 |
Q |
| |
|
|| || ||||||||||| ||||||||| |||||||||||||| |||||| | | |||||||||||||||||||||| |||||||||||||| |
|
|
| T |
8713 |
ctatttttttgcaaaatttcttgaaccttttgttgcattgactctaaagacgagagatgtggattttttccaatggtgttttctatgatggactctaaaa |
8812 |
T |
|
| Q |
498 |
ttttcatcaaactgaaatcatccgaaacacacacccatattttcaagtcaaaatgtgtttttaccctttcat |
569 |
Q |
| |
|
||||||| | ||| |||| | ||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
8813 |
ctttcatcgcattgatatcaccagaaacacacacccatattttcaagtcaaaatgtgtctttaccctttcat |
8884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133; HSP #2
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 1 - 569
Target Start/End: Original strand, 12655 - 13226
Alignment:
| Q |
1 |
agacatgatagaatcaacctcaggcaaattccaaaactcactttccagtacagaaatccattgatgttcgttgcttgtaaagcacaaactgctacccaat |
100 |
Q |
| |
|
||||||||||| |||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| || ||| |
|
|
| T |
12655 |
agacatgataggatcaacctcaggtaaactccaaaactcactttctagtacagaaatccattgatgttcgtcacttgtaaagcacaaactgcttcctaat |
12754 |
T |
|
| Q |
101 |
actttagcagcaagaggtgaacccacacattttctcactaactttttgcctattgccacaagctctgcacgctcttctctattttctccaaaagcttgtt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |
|
|
| T |
12755 |
actttagcagcaagaggtgaacccacacattttctcactaactttttgcctattgccacaagctctgcacgctcttctctatttgctacaaaagcttgtt |
12854 |
T |
|
| Q |
201 |
gtttgaacaaagaccagatgtcatcatcaaataactgtgctaaaggatgaacct---tagttcccatgatggatgcaacaatctcaagtctggtagtgac |
297 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| ||||||| ||||| | | |||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
12855 |
gtttgaacaaagaccagatgtcatcatcagataagcttgctaaatgatgagcatcagaagttcccatgatggatgcaacaatgtcaagtctggtagtgac |
12954 |
T |
|
| Q |
298 |
caaaattgatgcacctttctttccaagttgcaacaaagactttaacttattccatttctcttggtcttcactccaaacatcatcaagaacaagcaaatac |
397 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
12955 |
caaaattgatgcacctttctttccatgttgcaacgaagacttgaacttattccatttctcttggtcttcactccacacatcatcaagaacaagcaaatac |
13054 |
T |
|
| Q |
398 |
cttttgttttgcaaaatatcttgaaccnnnnnnnnncttgactctaaagacaagagatctaggttttttccaatggtgttttctaggatggactctaaaa |
497 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||||||||||| |||||| | | |||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
13055 |
cttttgttttgcaaaatttcttgaaccttttttcgcattgactctaaagaggagagatttggattttttccaatggtgtcttctatgatggactctaaaa |
13154 |
T |
|
| Q |
498 |
ttttcatcaaactgaaatcatccgaaacacacacccatattttcaagtcaaaatgtgtttttaccctttcat |
569 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
13155 |
ccttcatcatactgaaatcatcagaaacacacacccatattttcaagtcaaaatgtgtctttacactttcat |
13226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 26 - 234
Target Start/End: Original strand, 17886 - 18094
Alignment:
| Q |
26 |
aaattccaaaactcactttccagtacagaaatccattgatgttcgttgcttgtaaagcacaaactgctacccaatactttagcagcaagaggtgaaccca |
125 |
Q |
| |
|
|||||||||| |||||||||| |||||||| |||||||||||| | ||| |||||| || | ||| ||||| || || ||||||||||||||||||| |
|
|
| T |
17886 |
aaattccaaacctcactttcctttacagaaagccattgatgttcctcacttttaaagcgcagaaggcttcccaaaaccttggcagcaagaggtgaaccca |
17985 |
T |
|
| Q |
126 |
cacattttctcactaactttttgcctattgccacaagctctgcacgctcttctctattttctccaaaagcttgttgtttgaacaaagaccagatgtcatc |
225 |
Q |
| |
|
| ||||||||||||| || || |||||||| |||||||||| ||||| || | |||| ||||| ||| |||||||| || || ||||| |||||||| |
|
|
| T |
17986 |
cgcattttctcactatctccttacctattgctgcaagctctgcgcgctcctccccatttggtccaacagcatgttgtttaaataatgaccaaatgtcatc |
18085 |
T |
|
| Q |
226 |
atcaaataa |
234 |
Q |
| |
|
|||| |||| |
|
|
| T |
18086 |
atcatataa |
18094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0230 (Bit Score: 176; Significance: 2e-94; HSPs: 1)
Name: scaffold0230
Description:
Target: scaffold0230; HSP #1
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 30 - 567
Target Start/End: Original strand, 4507 - 5054
Alignment:
| Q |
30 |
tccaaaactcactttccagtacagaaatccattgatgttcgttgcttgtaaagcacaaactg-ctacccaatactttagcagcaagaggtgaacccacac |
128 |
Q |
| |
|
||||||||| ||||||| |||||||| |||||||||||| | ||| |||||| |||| | || || | |||||| ||||||||||| |||||||||| |
|
|
| T |
4507 |
tccaaaacttactttcctttacagaaagccattgatgttcctcacttttaaagcgcaaaaaggcttcctagtactttggcagcaagaggcgaacccacac |
4606 |
T |
|
| Q |
129 |
attttctcactaactttttgcctattgccacaagctctgcacgctcttctctattttctccaaaagcttgttgtttgaacaaagaccagatgtcatcatc |
228 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||||| |||||| |||||| |||||||| ||||||| |
|
|
| T |
4607 |
attttctcactaactccttgcctattgccacaagctctgcacgctcttctctatttgtttcaaaagctttttgtttaaacaaataccagatggcatcatc |
4706 |
T |
|
| Q |
229 |
aaataactgtgctaaaggatgaac---cttagttcccatgatggatgcaacaatctcaagtctggtagtgaccaaaattgatgcacctttc------ttt |
319 |
Q |
| |
|
| |||| | ||| ||||| | | |||||||||||| ||||||||||| ||||||||||| |||||||||| ||||||||||||| ||| |
|
|
| T |
4707 |
agataagcctaacaaatgatgagcaggataagttcccatgattgatgcaacaatgtcaagtctggttgtgaccaaaactgatgcacctttcgtgccattt |
4806 |
T |
|
| Q |
320 |
ccaagttgcaacaaagactttaacttattccatttctcttggtcttcactccaaacatcatcaagaacaagcaaataccttttgttttgcaaaatatctt |
419 |
Q |
| |
|
||| |||||| ||| |||| |||| |||||||||||||||||||||| |||| ||||||||||||||||| | ||| ||||||||||||||||||| || |
|
|
| T |
4807 |
ccacgttgcagaaaatacttgaactgattccatttctcttggtcttcattccacacatcatcaagaacaagtagatatcttttgttttgcaaaatatttt |
4906 |
T |
|
| Q |
420 |
gaaccnnnnnnnnncttgactctaaagacaagagatctaggttttttccaatggtgttttctaggatggactctaaaattttcatcaaactgaaatcatc |
519 |
Q |
| |
|
|||| |||| ||||||||| |||||||| | ||||||||| |||| ||||| |||||||| |||| |||||||| | | ||||| || |
|
|
| T |
4907 |
taaccttcttttgcattgattctaaagacgagagatctggattttttccatcggtggattctatgatggactgcaaaactttcatcatattaaaatcctc |
5006 |
T |
|
| Q |
520 |
cgaaacacacacccatattttcaagtcaaaatgtgtttttaccctttc |
567 |
Q |
| |
|
||||||||||||||||||||||||| ||| ||||| | ||||||||| |
|
|
| T |
5007 |
agaaacacacacccatattttcaagttaaagtgtgtatctaccctttc |
5054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0511 (Bit Score: 169; Significance: 2e-90; HSPs: 1)
Name: scaffold0511
Description:
Target: scaffold0511; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 30 - 569
Target Start/End: Original strand, 9188 - 9736
Alignment:
| Q |
30 |
tccaaaactcactttccagtacagaaatccattgatgttcgttgcttgtaaagcacaaactgctacccaatactttagcagcaagaggtgaacccacaca |
129 |
Q |
| |
|
||||||||| ||| ||| |||||||| |||||||||||| | ||| |||||| |||| || || | |||||| || |||||||| ||||||||||| |
|
|
| T |
9188 |
tccaaaacttactgtcctttacagaaagccattgatgttcctcacttttaaagcgcaaaagacttcctagtactttggcggcaagaggcgaacccacaca |
9287 |
T |
|
| Q |
130 |
ttttctcactaactttttgcctattgccacaagctctgcacgctcttctctattttctccaaaagcttgttgtttgaacaaagaccagatgtcatcatca |
229 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||||| |||||| |||||| |||||||| |||||||| |
|
|
| T |
9288 |
ttttctcactaactccttgcctattgccacaagctctgcacgctcttctctatttgtttcaaaagctttttgtttaaacaaataccagatggcatcatca |
9387 |
T |
|
| Q |
230 |
aataactgtgctaaaggatgaac---cttagttcccatgatggatgcaacaatctcaagtctggtagtgaccaaaattgatgcacctttc------tttc |
320 |
Q |
| |
|
|||| | ||| ||||| | | |||||||||||| ||||||||||| ||||||||||| |||||||||| ||||||||||||| |||| |
|
|
| T |
9388 |
gataagcctaacaaatgatgagcaggataagttcccatgattgatgcaacaatgtcaagtctggttgtgaccaaaactgatgcacctttcgtgccatttc |
9487 |
T |
|
| Q |
321 |
caagttgcaacaaagactttaacttattccatttctcttggtcttcactccaaacatcatcaagaacaagcaaataccttttgttttgcaaaatatcttg |
420 |
Q |
| |
|
|| |||||| ||| |||| |||| |||||||||||||||||||||| |||| ||||||||||||||||| | ||| ||||| ||||||||||||| || |
|
|
| T |
9488 |
cacgttgcagaaaatacttgaactgattccatttctcttggtcttcaatccacacatcatcaagaacaagtagatatcttttattttgcaaaatattttt |
9587 |
T |
|
| Q |
421 |
aaccnnnnnnnnncttgactctaaagacaagagatctaggttttttccaatggtgttttctaggatggactctaaaattttcatcaaactgaaatcatcc |
520 |
Q |
| |
|
|||| |||| ||||||||| |||||||| | ||||||||| |||| ||||| |||||||| |||| |||||||| | | ||||| || |
|
|
| T |
9588 |
aaccttcttttgcattgattctaaagacgagagatctggattttttccatcggtggattctatgatggactgcaaaactttcatcatattaaaatcctca |
9687 |
T |
|
| Q |
521 |
gaaacacacacccatattttcaagtcaaaatgtgtttttaccctttcat |
569 |
Q |
| |
|
||||||||||||||||||||||||| ||| ||||| | ||||||||||| |
|
|
| T |
9688 |
gaaacacacacccatattttcaagttaaagtgtgtatctaccctttcat |
9736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 103; Significance: 6e-51; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 1 - 423
Target Start/End: Original strand, 13377897 - 13378328
Alignment:
| Q |
1 |
agacatgatagaatcaacctcaggcaaattccaaaactcactttccagtacagaaatccattgatgttcgttgcttgtaaagcacaaactgctacccaat |
100 |
Q |
| |
|
||||||||||| | | |||||| |||||||||| || ||||||| |||||||| |||||||||||| | ||| |||||| | || ||| ||||| |
|
|
| T |
13377897 |
agacatgatagggttatcctcagataaattccaaagcttactttcctttacagaaagccattgatgttcctcacttttaaagcgcgaaaggcttcccaaa |
13377996 |
T |
|
| Q |
101 |
actttagcagcaagaggtgaacccacacattttctcactaactttttgcctattgccacaagctctgcacgctcttctctattttctccaaaagcttgtt |
200 |
Q |
| |
|
|| || |||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||| | ||| ||||| ||| ||| |
|
|
| T |
13377997 |
accttggcagcaagaggtgaacccacacattttctcactatctccttgcctattgctgcaagctctgcacgctcttccccattaggtccaatagcatgta |
13378096 |
T |
|
| Q |
201 |
gtttgaacaaagaccagatgtcatcatcaaataactgtgctaaaggatgaac---cttagttcccatgatggatgcaacaatctcaagtctggtagtgac |
297 |
Q |
| |
|
|||| ||||||||||| ||||| |||||| ||| | | ||| ||||| | | |||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
13378097 |
gtttaaacaaagaccaaatgtcttcatcatgtaatcctaccaaatgatgagcagggtgagttcccatgatggatgcaacaatctcaagtcgcgtagtgac |
13378196 |
T |
|
| Q |
298 |
caaaattgatgcacctttcttt------ccaagttgcaacaaagactttaacttattccatttctcttggtcttcactccaaacatcatcaagaacaagc |
391 |
Q |
| |
|
|||||||||| |||||| || ||| |||||||||| |||| ||||| | |||||| | ||||||||| |||| |||||||| || ||||| |
|
|
| T |
13378197 |
taaaattgatgatcctttccttgtaatgccacattgcaacaaaaacttgaacttttcccatttaacatggtcttcattccacacatcatctagtacaagt |
13378296 |
T |
|
| Q |
392 |
aaataccttttgttttgcaaaatatcttgaac |
423 |
Q |
| |
|
|||||||||||| ||||||||| |||||||| |
|
|
| T |
13378297 |
aaataccttttgctttgcaaaacttcttgaac |
13378328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 497 - 549
Target Start/End: Original strand, 13378402 - 13378454
Alignment:
| Q |
497 |
attttcatcaaactgaaatcatccgaaacacacacccatattttcaagtcaaa |
549 |
Q |
| |
|
|||||| ||| |||||||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
13378402 |
attttcttcatactgaaatcatcagaaacacaaacccatattttcaagtcaaa |
13378454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 97; Significance: 2e-47; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 1 - 316
Target Start/End: Complemental strand, 38939714 - 38939396
Alignment:
| Q |
1 |
agacatgatagaatcaacctcaggcaaattccaaaactcactttccagtacagaaatccattgatgttcgttgcttgtaaagcacaaactgctacccaat |
100 |
Q |
| |
|
||||||||||| | | |||||| |||||||||| |||||||||| |||||||| |||||||||||| | ||| |||||| |||| ||| |||||| |
|
|
| T |
38939714 |
agacatgatagggttatcctcagataaattccaaagctcactttcctttacagaaaaccattgatgttcctcacttttaaagcgcaaaaggcttcccaat |
38939615 |
T |
|
| Q |
101 |
actttagcagcaagaggtgaacccacacattttctcactaactttttgcctattgccacaagctctgcacgctcttctctattttctccaaaagcttgtt |
200 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||| ||||||| | || | ||||||||| |||| |
|
|
| T |
38939614 |
actttggcagcaagaggtgaacccacacattttctcactatctccttgcctattgctacaagctctgcatgctcttccccatctggtccaaaagcatgtt |
38939515 |
T |
|
| Q |
201 |
gtttgaacaaagaccagatgtcatcatcaaataactgtgctaaaggatgaac---cttagttcccatgatggatgcaacaatctcaagtctggtagtgac |
297 |
Q |
| |
|
|||| || || ||||| ||||| |||||| |||| | | ||| | ||| | | |||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
38939514 |
gtttaaataatgaccaaatgtcgtcatcatataaacctaccaaatggtgagcagggtgagttcccatgatggatgcaacaatctcaagtcgtgttgtgac |
38939415 |
T |
|
| Q |
298 |
caaaattgatgcacctttc |
316 |
Q |
| |
|
||||| ||||| |||||| |
|
|
| T |
38939414 |
taaaatagatgcccctttc |
38939396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 98 - 424
Target Start/End: Complemental strand, 7053524 - 7053189
Alignment:
| Q |
98 |
aatactttagcagcaagaggtgaacccacacattttctcactaactttttgcctattgccacaagctctgcacgctcttctctattttctccaaaagctt |
197 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||||||||||| || |||||||||| ||||||||||| ||||||||| |||| |||||||| |
|
|
| T |
7053524 |
aatacttttgctgcaagaggtgaacccacacattttctcactatctccttgcctattgtggcaagctctgcatgctcttctccatttggtccaaaagtac |
7053425 |
T |
|
| Q |
198 |
gttgtttgaacaaagaccagatgtcatcatcaaataactgtgctaaaggatga---accttagttcccatgatggatgcaacaatctcaagtctggtagt |
294 |
Q |
| |
|
||||||||||||| ||| |||||||||||| |||| | ||||| ||||| | |||||||||||| ||||||||||| |||||||| ||||| |
|
|
| T |
7053424 |
agtgtttgaacaaaggccaaatgtcatcatcagataaacctactaaaagatgacggggttgagttcccatgatagatgcaacaatttcaagtcttgtagt |
7053325 |
T |
|
| Q |
295 |
gaccaaaattgatgcacctttctttccaagt------tgcaacaaagactttaacttattccatttctcttggtcttcactccaaacatcatcaagaaca |
388 |
Q |
| |
|
||| |||||||||| ||||||| || || | ||||||||| |||| ||||| | |||||| | ||||||||| ||||||||||||| | ||| |
|
|
| T |
7053324 |
gactaaaattgatgaacctttccttgtaattgcagactgcaacaaaaacttgaacttgtaccatttaccatggtcttcattccaaacatcatctaataca |
7053225 |
T |
|
| Q |
389 |
agcaaataccttttgttttgcaaaatatcttgaacc |
424 |
Q |
| |
|
|| |||||||||||| ||||||||| ||||||||| |
|
|
| T |
7053224 |
agtaaataccttttgctttgcaaaacttcttgaacc |
7053189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 509 - 569
Target Start/End: Complemental strand, 7053104 - 7053044
Alignment:
| Q |
509 |
ctgaaatcatccgaaacacacacccatattttcaagtcaaaatgtgtttttaccctttcat |
569 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||||||||||||| || |||| ||||||| |
|
|
| T |
7053104 |
ctgaaatcatctgaaacacaaacccatattttcaagtcaaaatgggtgcttacactttcat |
7053044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 497 - 569
Target Start/End: Complemental strand, 38939209 - 38939137
Alignment:
| Q |
497 |
attttcatcaaactgaaatcatccgaaacacacacccatattttcaagtcaaaatgtgtttttaccctttcat |
569 |
Q |
| |
|
|||||||||| ||||||||||| |||||||| |||||||||||||| |||||||| || |||| ||||||| |
|
|
| T |
38939209 |
attttcatcatgctgaaatcatctgaaacacaaacccatattttcaaatcaaaatgggtggttacgctttcat |
38939137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256 (Bit Score: 63; Significance: 4e-27; HSPs: 3)
Name: scaffold0256
Description:
Target: scaffold0256; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 8957 - 9111
Alignment:
| Q |
1 |
agacatgatagaatcaacctcaggcaaattccaaaactcactttccagtacagaaatccattgatgttcgttgcttgtaaagcacaaactgctacccaat |
100 |
Q |
| |
|
||||||||||| |||| |||||| |||||||||| |||||||||| ||||| | |||||||||||| | ||| ||||||||||| || |||||| |
|
|
| T |
8957 |
agacatgataggatcatcctcagttaaattccaaagctcactttccttgacagagagccattgatgttcctcacttttaaagcacaaaagacttcccaat |
9056 |
T |
|
| Q |
101 |
actttagcagcaagaggtgaacccacacattttctcactaactttttgcctattg |
155 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| | || |||||||||| |
|
|
| T |
9057 |
actttggcagcaagaggtgaacccacacattttctcacaatctccttgcctattg |
9111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 256 - 316
Target Start/End: Original strand, 9208 - 9268
Alignment:
| Q |
256 |
agttcccatgatggatgcaacaatctcaagtctggtagtgaccaaaattgatgcacctttc |
316 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| || ||||| ||||| |||||||||||| |
|
|
| T |
9208 |
agttcccatgatggatgcaacaatatcaagtcgtgttgtgactaaaatagatgcacctttc |
9268 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 497 - 552
Target Start/End: Original strand, 9455 - 9510
Alignment:
| Q |
497 |
attttcatcaaactgaaatcatccgaaacacacacccatattttcaagtcaaaatg |
552 |
Q |
| |
|
|||||||||| ||||||||||| |||||||| |||||||||||||| |||||||| |
|
|
| T |
9455 |
attttcatcatgctgaaatcatctgaaacacaaacccatattttcaaatcaaaatg |
9510 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 149 - 210
Target Start/End: Original strand, 30207085 - 30207146
Alignment:
| Q |
149 |
cctattgccacaagctctgcacgctcttctctattttctccaaaagcttgttgtttgaacaa |
210 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| |||||| || | |||||||||||| |
|
|
| T |
30207085 |
cctatttccacaagctctgcacgctcttctctattttgtccaaatgcatattgtttgaacaa |
30207146 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 328 - 396
Target Start/End: Original strand, 15331854 - 15331922
Alignment:
| Q |
328 |
caacaaagactttaacttattccatttctcttggtcttcactccaaacatcatcaagaacaagcaaata |
396 |
Q |
| |
|
||||||||| || ||||| | |||||||||||| | |||| |||| |||||||| | |||||||||||| |
|
|
| T |
15331854 |
caacaaagatttcaacttgtgccatttctcttgtttttcattccacacatcatctaaaacaagcaaata |
15331922 |
T |
|
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Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 146 - 210
Target Start/End: Complemental strand, 7581265 - 7581201
Alignment:
| Q |
146 |
ttgcctattgccacaagctctgcacgctcttctctattttctccaaaagcttgttgtttgaacaa |
210 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| | |||||| || | |||||||||||| |
|
|
| T |
7581265 |
ttgcctattgccacaagctctgcactctcttctctatcatgtccaaatgcatattgtttgaacaa |
7581201 |
T |
|
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