View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16714_low_8 (Length: 551)
Name: NF16714_low_8
Description: NF16714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16714_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 141; Significance: 1e-73; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 65 - 248
Target Start/End: Complemental strand, 30181236 - 30181055
Alignment:
| Q |
65 |
cttgttttctgttattttcaaaactgatttctcctaaactttacttaaaatttaggagatgattgcttgattaagtgtgtgtgtgagatcaattgttaat |
164 |
Q |
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| T |
30181236 |
cttgttttctgttattttcaaaactgatctctcctaaactttacttaaaatataggagatgattgcttgattaagtgtgtgtg--agatcaattgttaat |
30181139 |
T |
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| Q |
165 |
tcttgagattaaaatgttgggattcaaaggcatgctacttcataagttctatgcatgttcatcattggaccgcattaagttgtt |
248 |
Q |
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| T |
30181138 |
tcttgagattaaaatgttggaattcaaagacatgctacttcagaagttccgtgcatgttcatcattggactgcattaagttgtt |
30181055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 408 - 536
Target Start/End: Original strand, 30781387 - 30781515
Alignment:
| Q |
408 |
agttaattatccatgtacaaatatccattataccctatgattttttgttgttgaaacggccaatgtaatattgttaggaaaccttcccagtgttaatcaa |
507 |
Q |
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| T |
30781387 |
agttaattatccatgtacaaatatccattataccctatgattttttgttgttgaaacggccaatgtaatattgttagcaaaccttcccagtgttaatcaa |
30781486 |
T |
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| Q |
508 |
gattagagagaaatagcaatgtcatagtt |
536 |
Q |
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| T |
30781487 |
gattagagagaaatagcaatgtcatagtt |
30781515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 435 - 536
Target Start/End: Complemental strand, 30180619 - 30180509
Alignment:
| Q |
435 |
ttataccctatgattttttgttgttgaaacggccaatgtaatattgttaggaaaccttccc---------agtgttaatcaagattagagagaaatagca |
525 |
Q |
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| T |
30180619 |
ttataccctatgatttttcgttgttgaaacggccaatgtaatattgttagcaaaccttccctgtgttaatagtgttaatcaagattagagagaaatagca |
30180520 |
T |
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| Q |
526 |
atgtcatagtt |
536 |
Q |
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| T |
30180519 |
atgtcatagtt |
30180509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 273 - 359
Target Start/End: Complemental strand, 30181031 - 30180945
Alignment:
| Q |
273 |
aaccatactattactttcttcagtccttaaccatacgaagttaaaatgatttctcatgttttaaatagtaacatttaattttacaaa |
359 |
Q |
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| T |
30181031 |
aaccatactgttactttcttcagtcattaaccatacgaagctaaaatgatttctcatgttttacatagtaacatttaattttacaaa |
30180945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 351 - 431
Target Start/End: Complemental strand, 30180742 - 30180662
Alignment:
| Q |
351 |
ttttacaaattcaattttatattgtgctctcacattttgagtatctttgttatagtgagttaattatccatgtacaaatat |
431 |
Q |
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| T |
30180742 |
ttttacaaattcaattttatattgtgctctcacattttgaatagctgtgttataatgagttaattatccatgtacaaatat |
30180662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 128 - 232
Target Start/End: Original strand, 30255129 - 30255233
Alignment:
| Q |
128 |
tgcttgattaagtgtgtgtgtgagatcaattgttaattcttgagattaaaatgttgggattcaaaggcatgctacttcataagttctatgcatgttcatc |
227 |
Q |
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| T |
30255129 |
tgcttgattcagtgtgtttgtgtgatcgattgttaattcttgatattaaattggtgggatagaaatgcatgtttcttcagaagttttgtgcatgttggtc |
30255228 |
T |
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| Q |
228 |
attgg |
232 |
Q |
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| T |
30255229 |
attgg |
30255233 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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