View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16715_high_10 (Length: 269)

Name: NF16715_high_10
Description: NF16715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16715_high_10
NF16715_high_10
[»] chr3 (11 HSPs)
chr3 (10-261)||(17530876-17531127)
chr3 (10-261)||(17535815-17536066)
chr3 (10-261)||(54623448-54623698)
chr3 (10-253)||(32876956-32877199)
chr3 (10-252)||(37919423-37919660)
chr3 (10-261)||(46279732-46279981)
chr3 (10-261)||(36433473-36433718)
chr3 (159-261)||(37919881-37919982)
chr3 (27-97)||(36433348-36433416)
chr3 (27-98)||(46279606-46279676)
chr3 (27-105)||(37920018-37920094)
[»] chr1 (6 HSPs)
chr1 (10-261)||(25881141-25881391)
chr1 (10-261)||(35755454-35755700)
chr1 (94-261)||(23550741-23550905)
chr1 (178-250)||(28313754-28313826)
chr1 (27-98)||(35755328-35755398)
chr1 (14-98)||(23550985-23551067)
[»] scaffold0247 (1 HSPs)
scaffold0247 (10-261)||(23735-23985)
[»] chr4 (11 HSPs)
chr4 (10-252)||(23622003-23622244)
chr4 (11-254)||(16490664-16490907)
chr4 (10-176)||(23442651-23442817)
chr4 (10-261)||(25538125-25538371)
chr4 (10-261)||(25515297-25515543)
chr4 (10-253)||(28070044-28070280)
chr4 (180-261)||(23443632-23443713)
chr4 (27-98)||(50065715-50065784)
chr4 (200-261)||(17239192-17239253)
chr4 (38-98)||(28070336-28070395)
chr4 (53-98)||(25538026-25538069)
[»] scaffold0021 (1 HSPs)
scaffold0021 (10-261)||(176586-176836)
[»] chr8 (5 HSPs)
chr8 (10-261)||(988280-988526)
chr8 (14-261)||(7837065-7837307)
chr8 (14-259)||(7807643-7807883)
chr8 (14-98)||(988582-988664)
chr8 (14-98)||(7837367-7837451)
[»] chr5 (2 HSPs)
chr5 (10-253)||(2641498-2641735)
chr5 (14-98)||(2641791-2641872)
[»] chr6 (1 HSPs)
chr6 (10-95)||(12391376-12391462)


Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 10 - 261
Target Start/End: Original strand, 17530876 - 17531127
Alignment:
Q  10 gacatcatccctatccatttgtagctttaccagaatgttctcaagaacattctttctttgtaaaacaattttgttcttctttctttaaggcacgtgcttt 109  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17530876 gacatcatccttatccatttgtagctttaccagaatgttctcaagaacattctttctttgtaaaacaattttgttcttctttctttaaggcacgtgcttt 17530975  T
Q  110 tccaattcctttttaaatgcaaaggtctttatgtaatcatatgatattctttccatttatgtcatatatccaaagtattttcttttggtgagacatagag 209  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17530976 tccaattcctttttaaatgcaaaggcctttatgtaatcatatgatattctttccatttatgtcatatatccaaagtattttcttttggtgagacatagag 17531075  T
Q  210 aatattttgcttcttgaatttgttccaaaaagtccatttatgtccctttgct 261  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| ||||||    
T  17531076 aatattttgtttcttgaatttgttccaaaaagtccatttatgtccttttgct 17531127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 10 - 261
Target Start/End: Original strand, 17535815 - 17536066
Alignment:
Q  10 gacatcatccctatccatttgtagctttaccagaatgttctcaagaacattctttctttgtaaaacaattttgttcttctttctttaaggcacgtgcttt 109  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17535815 gacatcatccttatccatttgtagctttaccagaatgttctcaagaacattctttctttgtaaaacaattttgttcttctttctttaaggcacgtgcttt 17535914  T
Q  110 tccaattcctttttaaatgcaaaggtctttatgtaatcatatgatattctttccatttatgtcatatatccaaagtattttcttttggtgagacatagag 209  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17535915 tccaattcctttttaaatgcaaaggcctttatgtaatcatatgatattctttccatttatgtcatatatccaaagtattttcttttggtgagacatagag 17536014  T
Q  210 aatattttgcttcttgaatttgttccaaaaagtccatttatgtccctttgct 261  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| ||||||    
T  17536015 aatattttgtttcttgaatttgttccaaaaagtccatttatgtccttttgct 17536066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 10 - 261
Target Start/End: Complemental strand, 54623698 - 54623448
Alignment:
Q  10 gacatcatccctatccatttgtagctttaccagaatgttctcaagaacattctttctttgtaaaacaattttgttcttctttctttaaggcacgtgcttt 109  Q
    |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  54623698 gacatcatccttatccatttgtagctataccagaatgttctcaagaacattctttctttgtaaaacgattttgttcttctttctttaaggcacgtgcttt 54623599  T
Q  110 tccaattcctttttaaatgcaaaggtctttatgtaatcatatgatattctttccatttatgtcatatatccaaagtattttcttttggtgagacatagag 209  Q
    ||||||||||||||||||||||| |||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  54623598 tccaattcctttttaaatgcaaatgtcttt-tgtaatcatgtgatattctttccatttatgtcatatatccaaagtatcttcttttggtgagacatagag 54623500  T
Q  210 aatattttgcttcttgaatttgttccaaaaagtccatttatgtccctttgct 261  Q
    ||||||||||||||||||||| ||||||||||||||||||||||| ||||||    
T  54623499 aatattttgcttcttgaatttcttccaaaaagtccatttatgtccttttgct 54623448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 10 - 253
Target Start/End: Complemental strand, 32877199 - 32876956
Alignment:
Q  10 gacatcatccctatccatttgtagctttaccagaatgttctcaagaacattctttctttgtaaaacaattttgttcttctttctttaaggcacgtgcttt 109  Q
    |||||||||| |||| |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  32877199 gacatcatccttatctatttgtagctttaccaaaatgttctcaagaacattttttctttgtaaaacaattttgtttttctttctttaaggcacatgcttt 32877100  T
Q  110 tccaattcctttttaaatgcaaaggtctttatgtaatcatatgatattctttccatttatgtcatatatccaaagtattttcttttggtgagacatagag 209  Q
    | ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||  |||||| ||| |||||||||||||||||||||    
T  32877099 ttcaattcctttttaaatgcaaaggcctttatgtaatcatatgatattcttttcatttatgtcataagtccaaaatatattcttttggtgagacatagag 32877000  T
Q  210 aatattttgcttcttgaatttgttccaaaaagtccatttatgtc 253  Q
    |||||||||||||||||||||||||||| || ||||||||||||    
T  32876999 aatattttgcttcttgaatttgttccaacaaatccatttatgtc 32876956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 10 - 252
Target Start/End: Complemental strand, 37919660 - 37919423
Alignment:
Q  10 gacatcatccctatccatttgtagctttaccagaatgttctcaagaacattctttctttgtaaaacaattttgttcttctttctttaaggcacgtgcttt 109  Q
    |||||||||  ||||| ||||||| |||||| |||||||| ||||||||||||||||||||||||| ||||  |||||||||||||||||||||||||||    
T  37919660 gacatcatctttatccctttgtagttttaccggaatgttcgcaagaacattctttctttgtaaaactattt--ttcttctttctttaaggcacgtgcttt 37919563  T
Q  110 tccaattcctttttaaatgcaaaggtctttatgtaatcatatgatattctttccatttatgtcatatatccaaagtattttcttttggtgagacatagag 209  Q
    | ||||   | |||||||||||| | |||||||||||||| ||||||| |||||||||||| ||||||| |||||||| ||||||||||||||||| |||    
T  37919562 ttcaatatttctttaaatgcaaa-gcctttatgtaatcatgtgatattatttccatttatgccatatat-caaagtatcttcttttggtgagacattgag 37919465  T
Q  210 aatattttgcttcttgaatttgttccaaaaagtccatttatgt 252  Q
    ||||||||| |||||| |||||| ||| ||||| |||||||||    
T  37919464 aatattttg-ttcttggatttgtaccacaaagttcatttatgt 37919423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 10 - 261
Target Start/End: Original strand, 46279732 - 46279981
Alignment:
Q  10 gacatcatccctatccatttgtagctttaccagaatgttctcaagaacattctttctttgtaaaacaattttgttcttctttctttaaggcacgtgcttt 109  Q
    |||||||||| ||||| ||||||| || |||| |||||||||||||||||||||| |||||||||  ||||  |||||||||||||||||||| ||||||    
T  46279732 gacatcatccttatccctttgtagtttcaccataatgttctcaagaacattctttgtttgtaaaattattt--ttcttctttctttaaggcacatgcttt 46279829  T
Q  110 tccaattcctttttaaatgcaaaggtctttatgtaatcatatgatattctttccatttatgtcatatatccaaagtattttcttttggtgagacatagag 209  Q
    | ||||   | |||| ||||||| | |||||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||    
T  46279830 ttcaatatttctttatatgcaaa-gcctttatgtaatcatgtgatattctttccatttatgtcatatat-caaagtatattcttttggggagacatagag 46279927  T
Q  210 aatattttg--cttcttgaatttgttccaaaaagtccatttatgtccctttgct 261  Q
    |||||||||  ||| |||||||||| ||| ||||| ||||||||||| ||||||    
T  46279928 aatattttgttctttttgaatttgtaccacaaagttcatttatgtccttttgct 46279981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 10 - 261
Target Start/End: Original strand, 36433473 - 36433718
Alignment:
Q  10 gacatcatccctatccatttgtagctttaccagaatgttctcaagaacattctttctttgtaaaacaattttgttcttctttctttaaggcacgtgcttt 109  Q
    |||||||||| ||||| ||||||| ||||   ||||||||| ||||||||| | |||||||||||| |||||  ||||||||||||||||||| ||||||    
T  36433473 gacatcatccttatccctttgtagttttattggaatgttcttaagaacattttatctttgtaaaactatttt--tcttctttctttaaggcacttgcttt 36433570  T
Q  110 tccaattcctttttaaatgcaaaggtctttatgtaatcatatgatattctttccatttatgtcatatatccaaagtattttcttttggtgagacatagag 209  Q
    | ||||   | |||||||||||||  |||||||||||||| ||||||| |||||||||||||||||||  |||||||| ||||||||||||||||||| |    
T  36433571 ttcaatatttctttaaatgcaaagc-ctttatgtaatcatgtgatattttttccatttatgtcatata--caaagtatcttcttttggtgagacataggg 36433667  T
Q  210 aatattttgcttcttgaatttgttccaaaaagtccatttatgtccctttgct 261  Q
    ||||||||| |||||| |||||| ||||||||| ||||||||||| ||||||    
T  36433668 aatattttg-ttcttggatttgtaccaaaaagttcatttatgtccttttgct 36433718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 159 - 261
Target Start/End: Complemental strand, 37919982 - 37919881
Alignment:
Q  159 tttccatttatgtcatatatccaaagtattttcttttggtgagacatagagaatattttgcttcttgaatttgttccaaaaagtccatttatgtcccttt 258  Q
    ||||||||||||||||||||| ||||||| |||||||||||| |||||| |||||||||  ||||||||||||| ||| ||||| ||||||||||| |||    
T  37919982 tttccatttatgtcatatatc-aaagtatcttcttttggtgatacatagggaatatttttgttcttgaatttgtaccacaaagttcatttatgtcctttt 37919884  T
Q  259 gct 261  Q
    |||    
T  37919883 gct 37919881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 27 - 97
Target Start/End: Original strand, 36433348 - 36433416
Alignment:
Q  27 tttgtagctttaccagaatgttctcaagaacattctttctttgtaaaacaattttgttcttctttctttaa 97  Q
    ||||||| || |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  36433348 tttgtagtttcaccagaatgttctcaagaacattctttctttgtaaaacaattt--ttcttctttctttaa 36433416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 27 - 98
Target Start/End: Original strand, 46279606 - 46279676
Alignment:
Q  27 tttgtagctttaccagaatgttctcaagaacattctttctttgtaaaacaattttgttcttctttctttaag 98  Q
    ||||||| || ||||||||||||||||||||||| |||||||||| ||||||||| ||||||||||||||||    
T  46279606 tttgtagtttcaccagaatgttctcaagaacattttttctttgtagaacaatttt-ttcttctttctttaag 46279676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 27 - 105
Target Start/End: Complemental strand, 37920094 - 37920018
Alignment:
Q  27 tttgtagctttaccagaatgttctcaagaacattctttctttgtaaaacaattttgttcttctttctttaaggcacgtg 105  Q
    ||||||| || ||| |||||||||||| |||||| |||||||||||||| ||||  |||||||||||| ||||||||||    
T  37920094 tttgtagtttcaccggaatgttctcaaaaacattttttctttgtaaaactattt--ttcttctttcttaaaggcacgtg 37920018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 10 - 261
Target Start/End: Complemental strand, 25881391 - 25881141
Alignment:
Q  10 gacatcatccctatccatttgtagctttaccagaatgttctcaagaacattctttctttgtaaaacaattttgttcttctttctttaaggcacgtgcttt 109  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  25881391 gacatcatccttatccatttgtagctttaccagaatgttctcaagaacattctttctttgtaaaacaactttgttcttctttctttaaggcacgtgcttt 25881292  T
Q  110 tccaattcctttttaaatgcaaaggtctttatgtaatcatatgatattctttccatttatgtcatatatccaaagtattttcttttggtgagacatagag 209  Q
    | ||||| ||||||||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  25881291 ttcaatttctttttaaatgcaaaggccttt-tgtaatcatgtgatattctttccatttatgtcatatatccaaagtatcttcttttggtgagacatagag 25881193  T
Q  210 aatattttgcttcttgaatttgttccaaaaagtccatttatgtccctttgct 261  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  25881192 aatattttgcttcttgaatttgttccaaaaagtccatttatgtccttttgct 25881141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 10 - 261
Target Start/End: Original strand, 35755454 - 35755700
Alignment:
Q  10 gacatcatccctatccatttgtagctttaccagaatgttctcaagaacattctttctttgtaaaacaattttgttcttctttctttaaggcacgtgcttt 109  Q
    |||||||||| ||||| ||||||| ||||||| |||| |||||||||||||||||||||||||||| ||||  |||||||||||||||||||||||||||    
T  35755454 gacatcatccttatccctttgtagttttaccataatgctctcaagaacattctttctttgtaaaactattt--ttcttctttctttaaggcacgtgcttt 35755551  T
Q  110 tccaattcctttttaaatgcaaaggtctttatgtaatcatatgatattctttccatttatgtcatatatccaaagtattttcttttggtgagacatagag 209  Q
    | ||||   | |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |    
T  35755552 ttcaatatttctttaaatgcaaa-gtctttatgtaatcatatgatattctttccatttatgtcatatat-caaagtatcttcttttggtgagacataggg 35755649  T
Q  210 aatattttgcttcttgaatttgttccaaaaagtccatttatgtccctttgct 261  Q
    ||||||||| |||||| |||||| ||| ||||| ||||||||||| ||||||    
T  35755650 aatattttg-ttcttggatttgtaccacaaagttcatttatgtccttttgct 35755700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 94 - 261
Target Start/End: Complemental strand, 23550905 - 23550741
Alignment:
Q  94 ttaaggcacgtgcttttccaattcctttttaaatgcaaaggtctttatgtaatcatatgatattctttccatttatgtcatatatccaaagtattttctt 193  Q
    ||||||||||||||||| ||||   | ||||||||||||   |||||| ||||||| ||||||| |||||||||||||||||||| |||| ||| |||||    
T  23550905 ttaaggcacgtgctttttcaatatttctttaaatgcaaaac-ctttatataatcatgtgatattttttccatttatgtcatatat-caaattatcttctt 23550808  T
Q  194 ttggtgagacatagagaatattttgcttcttgaatttgttccaaaaagtccatttatgtccctttgct 261  Q
    |||||||||||||| |||||||||| |||||| |||||| ||| ||||| ||||||||||| ||||||    
T  23550807 ttggtgagacatagggaatattttg-ttcttggatttgtaccacaaagttcatttatgtccttttgct 23550741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 28313754 - 28313826
Alignment:
Q  178 tccaaagtattttcttttggtgagacatagagaatattttgcttcttgaatttgttccaaaaagtccatttat 250  Q
    |||||||||| |||||||||||||| | ||||||||||||||||||||| ||||| |||||||||||||||||    
T  28313754 tccaaagtatattcttttggtgagatagagagaatattttgcttcttgattttgtaccaaaaagtccatttat 28313826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 27 - 98
Target Start/End: Original strand, 35755328 - 35755398
Alignment:
Q  27 tttgtagctttaccagaatgttctcaagaacattctttctttgtaaaacaattttgttcttctttctttaag 98  Q
    ||||||| || |||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||    
T  35755328 tttgtagtttcaccaaaatgttctcaagaacattctttctttgtaaaac-atttttttcttctttctttaag 35755398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 14 - 98
Target Start/End: Complemental strand, 23551067 - 23550985
Alignment:
Q  14 tcatccctatccatttgtagctttaccagaatgttctcaagaacattctttctttgtaaaacaattttgttcttctttctttaag 98  Q
    |||||| ||||  ||||||| || |||||||| |||||||||||||| |||||||||||||||||||  ||||||||||||||||    
T  23551067 tcatccttatctctttgtagtttcaccagaatattctcaagaacattttttctttgtaaaacaattt--ttcttctttctttaag 23550985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0247 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 10 - 261
Target Start/End: Complemental strand, 23985 - 23735
Alignment:
Q  10 gacatcatccctatccatttgtagctttaccagaatgttctcaagaacattctttctttgtaaaacaattttgttcttctttctttaaggcacgtgcttt 109  Q
    |||||||||| ||| ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  23985 gacatcatccttattcatttgtagctttaccgtaatgttctcaagaacattctttctttgtaaaacaattttgttattctttctttaaggcacgtgcttt 23886  T
Q  110 tccaattcctttttaaatgcaaaggtctttatgtaatcatatgatattctttccatttatgtcatatatccaaagtattttcttttggtgagacatagag 209  Q
    | ||||||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  23885 ttcaattcctttttaaatgcaaaggccttt-tgtaatcatgtgatattctttccatttatgtcatatatccaaagtatcttcttttggtgagacatagag 23787  T
Q  210 aatattttgcttcttgaatttgttccaaaaagtccatttatgtccctttgct 261  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  23786 aatattttgcttcttgaatttgttccaaaaagtccatttatgtccttttgct 23735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 10 - 252
Target Start/End: Complemental strand, 23622244 - 23622003
Alignment:
Q  10 gacatcatccctatccatttgtagctttaccagaatgttctcaagaacattctttctttgtaaaacaattttgttcttctttctttaaggcacgtgcttt 109  Q
    |||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  23622244 gacatcatccttatccatttggagctttaccagaatgttctcaagaacattctttctttgtaaaacgattttgttcttctttctttaaggcacgtgcttt 23622145  T
Q  110 tccaattcctttttaaatgcaaaggtctttatgtaatcatatgatattctttccatttatgtcatatatccaaagtattttcttttggtgagacatagag 209  Q
    |||||||||||||||| |||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||    
T  23622144 tccaattcctttttaattgcaaaggccttt-tgtaatcataagatattctttccatttatgtcatatatccaaagtatcttcttttggtgagacatatag 23622046  T
Q  210 aatattttgcttcttgaatttgttccaaaaagtccatttatgt 252  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  23622045 aatattttgcttcttgaatttgttccaaaaagtccatttatgt 23622003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 11 - 254
Target Start/End: Original strand, 16490664 - 16490907
Alignment:
Q  11 acatcatccctatccatttgtagctttaccagaatgttctcaagaacattctttctttgtaaaacaattttgttcttctttctttaaggcacgtgctttt 110  Q
    ||||||||| ||||||||||||  || |||| ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  16490664 acatcatccttatccatttgtaatttcaccataatgttctcaagaacattctttctttgtaaaacaatttgtttcttctttctttaaggcacgtgctttt 16490763  T
Q  111 ccaattcctttttaaatgcaaaggtctttatgtaatcatatgatattctttccatttatgtcatatatccaaagtattttcttttggtgagacatagaga 210  Q
    |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |||||||  |||||||||| ||||||||||||||||||||||    
T  16490764 ccaattcctttttaaatgcaaaggtctttatgaaatcataagatattctttccatttgtgtcataagtccaaagtatattcttttggtgagacatagaga 16490863  T
Q  211 atattttgcttcttgaatttgttccaaaaagtccatttatgtcc 254  Q
     | |||||||||||||||||||||||||||| ||||||||||||    
T  16490864 tttttttgcttcttgaatttgttccaaaaagcccatttatgtcc 16490907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 10 - 176
Target Start/End: Original strand, 23442651 - 23442817
Alignment:
Q  10 gacatcatccctatccatttgtagctttaccagaatgttctcaagaacattctttctttgtaaaacaattttgttcttctttctttaaggcacgtgcttt 109  Q
    |||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23442651 gacatcatccttatccatttgtagctttaccataatgttctcaagaacattctttctttgtaaaacaattttgttcttctttctttaaggcacgtgcttt 23442750  T
Q  110 tccaattcctttttaaatgcaaaggtctttatgtaatcatatgatattctttccatttatgtcatat 176  Q
    |||||||||||||||||||||||||  |||||||||||||| |||||||||||||||||||||||||    
T  23442751 tccaattcctttttaaatgcaaaggcatttatgtaatcataagatattctttccatttatgtcatat 23442817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 10 - 261
Target Start/End: Original strand, 25538125 - 25538371
Alignment:
Q  10 gacatcatccctatccatttgtagctttaccagaatgttctcaagaacattctttctttgtaaaacaattttgttcttctttctttaaggcacgtgcttt 109  Q
    |||||||||| ||| | ||||||| |||||| |||||||| ||||||||||||||||||||||||| ||||  |||||||||||||||||||| ||||||    
T  25538125 gacatcatccttattcctttgtagttttaccggaatgttcccaagaacattctttctttgtaaaactattt--ttcttctttctttaaggcacatgcttt 25538222  T
Q  110 tccaattcctttttaaatgcaaaggtctttatgtaatcatatgatattctttccatttatgtcatatatccaaagtattttcttttggtgagacatagag 209  Q
    | ||||   | |||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  25538223 ttcaatatttctttaaatgcaaa-gtctttatgtaatcatgtgatattctttccatttatgtcatatat-caaagtatcttcttttggtgagacatagag 25538320  T
Q  210 aatattttgcttcttgaatttgttccaaaaagtccatttatgtccctttgct 261  Q
    ||||||||| |||||| |||||| ||| ||||| ||||||||||| ||||||    
T  25538321 aatattttg-ttcttggatttgtaccacaaagttcatttatgtccttttgct 25538371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 10 - 261
Target Start/End: Complemental strand, 25515543 - 25515297
Alignment:
Q  10 gacatcatccctatccatttgtagctttaccagaatgttctcaagaacattctttctttgtaaaacaattttgttcttctttctttaaggcacgtgcttt 109  Q
    |||||||||| ||| | ||||||| |||||| |||||||||||||||||||||||||||||||||| |||||  ||||||||||||||||||||||||||    
T  25515543 gacatcatccttattcctttgtagttttaccggaatgttctcaagaacattctttctttgtaaaactatttt--tcttctttctttaaggcacgtgcttt 25515446  T
Q  110 tccaattcctttttaaatgcaaaggtctttatgtaatcatatgatattctttccatttatgtcatatatccaaagtattttcttttggtgagacatagag 209  Q
    | ||||   | ||||||| || ||  |||||||||||||| ||||||||||| |||||||||||||||| |||||||| ||||||||||||||||||| |    
T  25515445 ttcaatatttctttaaattcacagc-ctttatgtaatcatgtgatattcttttcatttatgtcatatat-caaagtatcttcttttggtgagacataggg 25515348  T
Q  210 aatattttgcttcttgaatttgttccaaaaagtccatttatgtccctttgct 261  Q
    ||||||||| |||||| |||||| ||| ||||| ||| ||||||| ||||||    
T  25515347 aatattttg-ttcttggatttgtaccacaaagttcatctatgtccttttgct 25515297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 10 - 253
Target Start/End: Complemental strand, 28070280 - 28070044
Alignment:
Q  10 gacatcatccctatccatttgtagctttaccagaatgttctcaagaacattctttctttgtaaaacaattttgttcttctttctttaaggcacgtgcttt 109  Q
    |||||||| | ||||| ||||||| ||||| ||||||||||||| |||||| || |||| |||||| |||||  || ||||| |||||||||||||||||    
T  28070280 gacatcattcttatccctttgtagttttac-agaatgttctcaa-aacatttttcctttctaaaactatttt--tcatctttatttaaggcacgtgcttt 28070185  T
Q  110 tccaattcctttttaaatgcaaaggtctttatgtaatcatatgatattctttccatttatgtcatatatccaaagtattttcttttggtgagacatagag 209  Q
    | ||||   | || ||||||||||  ||||||||||| || |||||||||||||||||||||||||||| |||||||| ||||||||| ||| ||||| |    
T  28070184 ttcaatatttcttgaaatgcaaagc-ctttatgtaattatgtgatattctttccatttatgtcatatat-caaagtatcttcttttggcgaggcataggg 28070087  T
Q  210 aatattttgcttcttgaatttgttccaaaaagtccatttatgtc 253  Q
    ||||||| | |||||||||||||  || ||||| ||||||||||    
T  28070086 aatatttag-ttcttgaatttgtatcacaaagttcatttatgtc 28070044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 180 - 261
Target Start/End: Original strand, 23443632 - 23443713
Alignment:
Q  180 caaagtattttcttttggtgagacatagagaatattttgcttcttgaatttgttccaaaaagtccatttatgtccctttgct 261  Q
    |||||||| ||||| |||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||    
T  23443632 caaagtatcttcttctggtaagacatagagaatattttgcttcttgattttgtaccaaaaagtccatttatgtccttttgct 23443713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 27 - 98
Target Start/End: Original strand, 50065715 - 50065784
Alignment:
Q  27 tttgtagctttaccagaatgttctcaagaacattctttctttgtaaaacaattttgttcttctttctttaag 98  Q
    ||||||| || |||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  50065715 tttgtagtttcaccagaatgttctcaagaacattctttctttgtaaaacaattt--ttcttctttctttaag 50065784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 200 - 261
Target Start/End: Complemental strand, 17239253 - 17239192
Alignment:
Q  200 agacatagagaatattttgcttcttgaatttgttccaaaaagtccatttatgtccctttgct 261  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||    
T  17239253 agacatagagaatattttgcttcttgattttgtaccaaaaagtccatttatgtccttttgct 17239192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 38 - 98
Target Start/End: Complemental strand, 28070395 - 28070336
Alignment:
Q  38 accagaatgttctcaagaacattctttctttgtaaaacaattttgttcttctttctttaag 98  Q
    |||||||||||||||||||||||||||||||| ||||||||| | ||||||||||||||||    
T  28070395 accagaatgttctcaagaacattctttctttgcaaaacaattgt-ttcttctttctttaag 28070336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 98
Target Start/End: Original strand, 25538026 - 25538069
Alignment:
Q  53 agaacattctttctttgtaaaacaattttgttcttctttctttaag 98  Q
    |||||||| |||||||||||||||||||  ||||||||||||||||    
T  25538026 agaacattttttctttgtaaaacaattt--ttcttctttctttaag 25538069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 10 - 261
Target Start/End: Complemental strand, 176836 - 176586
Alignment:
Q  10 gacatcatccctatccatttgtagctttaccagaatgttctcaagaacattctttctttgtaaaacaattttgttcttctttctttaaggcacgtgcttt 109  Q
    ||||||||||  | ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  176836 gacatcatcctcaaccatttgtagctttaccagaatgttctaaagaacattctatctttgtaaaacaattttgttcttctttctttaaggcacgtgcttt 176737  T
Q  110 tccaattcctttttaaatgcaaaggtctttatgtaatcatatgatattctttccatttatgtcatatatccaaagtattttcttttggtgagacatagag 209  Q
    ||||||| ||||||||||||||||   ||||||||||||||||||| |||||||||||||||||||  |||||||||| |||||||||||||||||||||    
T  176736 tccaatttctttttaaatgcaaagacatttatgtaatcatatgataatctttccatttatgtcataagtccaaagtatattcttttggtgagacatagag 176637  T
Q  210 aatattttgcttcttgaatttgttccaaaaagtccatttatgtccctttgct 261  Q
    |||||||||||||||| |||||| ||||||||||||||||||||| ||||||    
T  176636 aatattttgcttcttg-atttgtaccaaaaagtccatttatgtccttttgct 176586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 137; Significance: 1e-71; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 10 - 261
Target Start/End: Complemental strand, 988526 - 988280
Alignment:
Q  10 gacatcatccctatccatttgtagctttaccagaatgttctcaagaacattctttctttgtaaaacaattttgttcttctttctttaaggcacgtgcttt 109  Q
    |||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||  ||||  |||||||||||||||||||||||||||    
T  988526 gacatcatccttatccctttgtagttttaccagaatgttctcaagaacattctttctttgtaaaattattt--ttcttctttctttaaggcacgtgcttt 988429  T
Q  110 tccaattcctttttaaatgcaaaggtctttatgtaatcatatgatattctttccatttatgtcatatatccaaagtattttcttttggtgagacatagag 209  Q
    | ||||   | |||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |||||||| |||||||| |||||||||| |    
T  988428 ttcaatatttctttaaatgcaaa-gtctttatgtaatcatgtgatattctttccatttatgtcatatat-caaagtatcttcttttgatgagacataggg 988331  T
Q  210 aatattttgcttcttgaatttgttccaaaaagtccatttatgtccctttgct 261  Q
    ||||||||| |||||| |||||  ||| ||||| ||||||||||| ||||||    
T  988330 aatattttg-ttcttggatttgcaccacaaagttcatttatgtccttttgct 988280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 14 - 261
Target Start/End: Complemental strand, 7837307 - 7837065
Alignment:
Q  14 tcatccctatccatttgtagctttaccagaatgttctcaagaacattctttctttgtaaaacaattttgttcttctttctttaaggcacgtgcttttcca 113  Q
    |||||| ||||| ||||||| |||||||||||||||||||||||||| |||||||||||||| ||||  ||||||||||||||||||||||| |||| ||    
T  7837307 tcatccttatccctttgtagttttaccagaatgttctcaagaacattttttctttgtaaaactattt--ttcttctttctttaaggcacgtgttttttca 7837210  T
Q  114 attcctttttaaatgcaaaggtctttatgtaatcatatgatattctttccatttatgtcatatatccaaagtattttcttttggtgagacatagagaata 213  Q
    ||   | |||||||||||| |||||||||||||||| ||||||||||| ||||| |||||||||| |||||||| |||||||||||||||||||||||||    
T  7837209 atatttctttaaatgcaaa-gtctttatgtaatcatgtgatattcttttcatttttgtcatatat-caaagtatcttcttttggtgagacatagagaata 7837112  T
Q  214 ttttgcttcttgaatttgttccaaaaagtccatttatgtccctttgct 261  Q
    ||||| ||||||||||||| ||| ||||| ||||||||||| ||||||    
T  7837111 ttttg-ttcttgaatttgtaccacaaagttcatttatgtccttttgct 7837065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 14 - 259
Target Start/End: Complemental strand, 7807883 - 7807643
Alignment:
Q  14 tcatccctatccatttgtagctttaccagaatgttctcaagaacattctttctttgtaaaacaattttgttcttctttctttaaggcacgtgcttttcca 113  Q
    |||||| ||||| ||||||| ||||| |||||||||||||||||||| |||||||||||||| ||||  |||||||||||||||||||||||||||| ||    
T  7807883 tcatccttatccgtttgtagttttacgagaatgttctcaagaacattttttctttgtaaaactattt--ttcttctttctttaaggcacgtgctttttca 7807786  T
Q  114 attcctttttaaatgcaaaggtctttatgtaatcatatgatattctttccatttatgtcatatatccaaagtattttcttttggtgagacatagagaata 213  Q
    ||   | |||||||||||| | ||||||||||| || ||||||||||| ||||| |||||||||| |||||||| |||||||||||||||||||||||||    
T  7807785 atatttctttaaatgcaaa-gcctttatgtaataatgtgatattcttttcatttttgtcatatat-caaagtatcttcttttggtgagacatagagaata 7807688  T
Q  214 ttttgcttcttgaatttgttccaaaaagtccatttatgtccctttg 259  Q
    ||||| ||||||||||||| ||| ||||| ||||||||||| ||||    
T  7807687 ttttg-ttcttgaatttgtaccacaaagttcatttatgtccttttg 7807643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 14 - 98
Target Start/End: Complemental strand, 988664 - 988582
Alignment:
Q  14 tcatccctatccatttgtagctttaccagaatgttctcaagaacattctttctttgtaaaacaattttgttcttctttctttaag 98  Q
    |||||| ||||  ||||||| || |||| ||||||||||||||||||||||||||||||||||||||  |||||||||| |||||    
T  988664 tcatccttatctctttgtagtttcaccataatgttctcaagaacattctttctttgtaaaacaattt--ttcttctttccttaag 988582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 14 - 98
Target Start/End: Complemental strand, 7837451 - 7837367
Alignment:
Q  14 tcatccctatccatttgtagctttaccagaatgttctcaagaacattctttctttgtaaaa-caattttgttcttctttctttaag 98  Q
    |||||| ||||  ||||||| || |||||||||||||  |||||||||||||||||||||| ||||||| ||||||||||||||||    
T  7837451 tcatccttatctctttgtagtttcaccagaatgttcttgagaacattctttctttgtaaaaacaatttt-ttcttctttctttaag 7837367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 114; Significance: 7e-58; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 10 - 253
Target Start/End: Complemental strand, 2641735 - 2641498
Alignment:
Q  10 gacatcatccctatccatttgtagctttaccagaatgttctcaagaacattctttctttgtaaaacaattttgttcttctttctttaaggcacgtgcttt 109  Q
    |||||||||  ||||| ||||||| |||||| |||||||||||||||||||||||||||||||||| ||||  |||||||||||||||||||| ||||||    
T  2641735 gacatcatctttatccctttgtagttttaccggaatgttctcaagaacattctttctttgtaaaactattt--ttcttctttctttaaggcacatgcttt 2641638  T
Q  110 tccaattcctttttaaatgcaaaggtctttatgtaatcatatgatattctttccatttatgtcatatatccaaagtattttcttttggtgagacatagag 209  Q
    | ||||   | |||||||||||| | |||||||||||||| |||||||||||||||||||||||||||| |||||||| |||||| |||||||||||| |    
T  2641637 ttcaatatttctttaaatgcaaa-gcctttatgtaatcatgtgatattctttccatttatgtcatatat-caaagtatcttctttgggtgagacataggg 2641540  T
Q  210 aatattttgcttcttgaatttgttccaaaaagtccatttatgtc 253  Q
    |||| ||   |||||| |||||| ||| ||||| ||||||||||    
T  2641539 aataatt--gttcttggatttgtaccacaaagttcatttatgtc 2641498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 98
Target Start/End: Complemental strand, 2641872 - 2641791
Alignment:
Q  14 tcatccctatccatttgtagctttaccagaatgttctcaagaacattctttctttgtaaaacaattttgttcttctttctttaag 98  Q
    |||||| ||||  ||||||| || ||||||||||||||||||||||| ||||||||| |||||||||  ||||||||| ||||||    
T  2641872 tcatccttatctctttgtagtttcaccagaatgttctcaagaacattatttctttgt-aaacaattt--ttcttctttatttaag 2641791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 10 - 95
Target Start/End: Complemental strand, 12391462 - 12391376
Alignment:
Q  10 gacatcatccctatccatttgtagctttaccagaatgttctcaagaacattc-tttctttgtaaaacaattttgttcttctttcttt 95  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  12391462 gacatcatccttatccatttgtagctttaccagaatgttctcaagaacattcttttctttgtaaaacaattttgttcttctttcttt 12391376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University