View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16715_high_2 (Length: 490)
Name: NF16715_high_2
Description: NF16715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16715_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 19 - 477
Target Start/End: Original strand, 30171537 - 30171995
Alignment:
| Q |
19 |
attacgataatataaattagtgaatattcacacacacattacaaacatgaatgtgaataattatttacttggataagtcttggggaagctgctgcaaaga |
118 |
Q |
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| T |
30171537 |
attacgaaaatataaattagtgaatattcacacacacattacaaacatgaatgtgaataattatttacttggataagtcttggggaagctgctgcaaaga |
30171636 |
T |
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| Q |
119 |
ccctagagttccaaggacgagccctagcaatagttgctgcagcagagccaaattttgggagggaggtgataagggtaaatgatgccattgttgaattttt |
218 |
Q |
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| T |
30171637 |
ccctagagttccaaggacgagccctagcaatagttgctgcagcagagccaaattttgggagggaggtgataagggtaaatgatgccattgttgaattctt |
30171736 |
T |
|
| Q |
219 |
atttagatttcttaaattctctcttgggaaatttgtatatgattatattgcattgttcatcactttgtatgtaaagtgtttatatagagatcctccacgg |
318 |
Q |
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| T |
30171737 |
atttagatttcttaaattctctcttgggaaatttgtatatgattatattgcattgtttatcactttgtatgtaaagtgtttatatagagatcctccacgg |
30171836 |
T |
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| Q |
319 |
tttgtttgcgtgccaagagtaattcacgctcactagtggtagaaaaaagagagatatataatagtgtcaatgcactcatttaggacgcagtattataaga |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| || |
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| T |
30171837 |
tttgtttgcgtgccaagagtaattcacgctcactagtggtagaaaaaagagagatatataatagtgtcaatgcactcatttaggacccagaattatagga |
30171936 |
T |
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| Q |
419 |
tttgttaatgtagatatttgttaaggaaatatattccacatttaaataagctacctctt |
477 |
Q |
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|| |||||| ||| | ||||||||||| |||||| |||||| ||||||||||||||||| |
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| T |
30171937 |
ttagttaatttagttgtttgttaaggacatatataccacatgtaaataagctacctctt |
30171995 |
T |
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