View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16715_high_3 (Length: 473)
Name: NF16715_high_3
Description: NF16715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16715_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 31 - 462
Target Start/End: Complemental strand, 361385 - 360954
Alignment:
| Q |
31 |
cggttacaatatatgctaatttaaatctatatatttgtatttgtaaaggattccagggatttcagtgattttagtgtcatggcttgtgacattttactca |
130 |
Q |
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| T |
361385 |
cggttacaatatatgctaatttaaatctatatatttgtatttgtaaaggattccagggatttcagtgattttagtgtcatggcttgtgacattttactca |
361286 |
T |
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| Q |
131 |
ctatggcaactagtgcaaatgcacgaattggttccagggaagagatttgatagatactttgatttaggagaacatgtatttcaaggcaaagttggattct |
230 |
Q |
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| T |
361285 |
ctgtggcaactagtgcaaatgcatgaattggttccagggaagagatttgatagatactttgatttaggagaacatgtatttcaaggcaaagttggattct |
361186 |
T |
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| Q |
231 |
gggttataatgatacaacaattgattgttcaggttgcttcaaccattgtgtattcagtcactggtggaaaatcacttaagaagttctgtgaaataatgac |
330 |
Q |
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| T |
361185 |
gggttataatgatacaacaattgattgttcaggttgcttcaaccattgtgtattcagtcactggtggaaaatcacttaagaagttctgtgaaataatgac |
361086 |
T |
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| Q |
331 |
tccaataatgccaatgtttgatgaaattagacaaacatattatatttgcttctttgtttgtatacagttactcctttcacaaattcctaacttcaatact |
430 |
Q |
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| T |
361085 |
tccaataatgccaatgtttgatgaaattagacaaacatattatatctgcttctttgtttgtatacagttactcctttcacaaattcctaacttcaatact |
360986 |
T |
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| Q |
431 |
ttaaaaggaatctcgttgctcgcggcattcat |
462 |
Q |
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| T |
360985 |
ttaaaaggaatctcgctgctcgcggcattcat |
360954 |
T |
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