View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16715_high_7 (Length: 351)
Name: NF16715_high_7
Description: NF16715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16715_high_7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 20 - 335
Target Start/End: Complemental strand, 3084982 - 3084667
Alignment:
| Q |
20 |
tgtccgtcttgtgcaaggtgcccgtataatatatatgccgtttaaaataatatattgtaaatcagaaattcctataacaaaggaactttcaggcaacann |
119 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3084982 |
tgtccgtcttgtgcaaggtacccgtataatatatatgccgtttaaaataataaattgtaaatcagaaattcctataacaaaggaactttcaggcaacatt |
3084883 |
T |
|
| Q |
120 |
nnnnnnngttacactttcaggtaacatttagaaaatgcaaaatagaaatcacttttaaaatacaaattatacacatatagttgctgaaaattataagtaa |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| ||||||||||||||||||| |
|
|
| T |
3084882 |
tttttgggttacactttcaggtaacatttagaaaatgcaaaatagaaatcacctttaaaatacgaattatacacatatagatgctgaaaattataagtaa |
3084783 |
T |
|
| Q |
220 |
cttgattgaagaagtaaagtaagattaagctgatggtcgatttttaaagaagcaaagaaaaatcgttgctcaaagaaaagaaactgatttgaggatagtg |
319 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
3084782 |
cttgattgaacaagtaaagtaagattaagctgatggtcgatttttaaagaagcaaagaaaaatcattgctcaaagaaaagaaactgatttgaggatagtg |
3084683 |
T |
|
| Q |
320 |
tttgtgtgtccaatgt |
335 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
3084682 |
tttgtgtgtccaatgt |
3084667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University