View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16715_low_1 (Length: 1131)
Name: NF16715_low_1
Description: NF16715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16715_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 800; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 800; E-Value: 0
Query Start/End: Original strand, 173 - 1118
Target Start/End: Complemental strand, 51351123 - 51350157
Alignment:
| Q |
173 |
gagaaacttcagccacaactgtggaaaacagagttgtttgcatgtcacaaaagctttgttcttctacgcttcgatatatacttgcttgcacttggtgggt |
272 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |
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| T |
51351123 |
gagaaacttcagccacaactgtggaaaacaaagttgtttgcatgtcacaaaagctttgttcttctacgcttcgatata--cttgcttgcacttggtgg-t |
51351027 |
T |
|
| Q |
273 |
ggtgaaatcaaaggctgtgttcatgctctaggagctgatcaatttgatgacaagaatccaaaggatcgtctccaactagctagcttctttgatt----gg |
368 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || |
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| T |
51351026 |
ggtgaaatcaaaggctgtgttcctgctctaggagctgatcaatttgatgacaagaatccaaaggaccgtctccaactagctagcttctttgattaattgg |
51350927 |
T |
|
| Q |
369 |
tttctgttagcttaggtgccacctttgtagttcatgttagatcacaattcaaatggtacaaaggttttcttatatctctcttatatgcttctgctgcact |
468 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51350926 |
tttttgttagcttaggtgccacctttgtagttcatgttagatcacaattcaaatggtacaaaggttttcttatatctctcttatatgcttctgctgcact |
51350827 |
T |
|
| Q |
469 |
aatttgcattgtttctggaaagagattctattgtaccccgaatccaggagggagtccattgttgggtattttacagggaccgtttcttcattcgcctcca |
568 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51350826 |
aatttgcattgtttctggaaagagattctattgtaccccgaatccaggagggagtccattgttgggtattttacagggaccgtttcttcattcgcctcca |
51350727 |
T |
|
| Q |
569 |
tatgttttatatatagctattcaagttgaatgtgtgtcaggtgtgttgaacaccgacatgacacatacttacattcaattttctcaaataattatcgttt |
668 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51350726 |
tatgttttatatatagctattcaagttgaatgtgtgtcagatgtgttgaacaccgacatgacacatacttacattcaattttctcaaataattatcgttt |
51350627 |
T |
|
| Q |
669 |
tcgaacgtgtgagagttttagtattttgacaa----------------------tcatatacttattattttgtaattgttcttgaaggtgctggttgtc |
746 |
Q |
| |
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||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51350626 |
tcgaacgtgtgagagttttagtattgtgacaatgtccgtatctctgtcagtgcttcatatacttattattttgtaattgttcttgaaggtgctggttgtc |
51350527 |
T |
|
| Q |
747 |
acggtcaagaattggagggtgaaatagagtcataagtctctccaatttcaattttaaattcaggttggagtaaatgtagttatttctattttatattcaa |
846 |
Q |
| |
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|| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51350526 |
acagtcaagaattggagggtgaaatagagtcataagtctcttcaatttcaattttaaattcaggttggagtaaatgtagttatttctattttatattcaa |
51350427 |
T |
|
| Q |
847 |
taataccagtactacattattagcataccagtatagattatcacaagtggtagatatcaattaatgcagagatatcttattaattttgtttttactacaa |
946 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51350426 |
taataccagtactacattattagcataccagtatagattatcacaagtggtagatatcaattaatgcagagatatcttattaattttgtttttactacaa |
51350327 |
T |
|
| Q |
947 |
gcatcaagattctactgtgctaaattgacaattgcagtaatatattcaccatcatcatcatgagtgcacattcgcattta-ggtgagtttgatagaatcg |
1045 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||| ||||||||||||| |
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| T |
51350326 |
gcatcaagattctactgtgctaaattgacaattgcagtaatatattcac---catcactatgagtgcacattcgcatttatggtgaatttgatagaatcg |
51350230 |
T |
|
| Q |
1046 |
cggtgtgcttctgtgaatttgacagaaactatactttgcagctctaataaaatcaatgtcactgtgatattct |
1118 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51350229 |
cggtgtgcttctgtgaatttgacagaaactatactttgcagctctaataaaatcaatgtcactgtgatattct |
51350157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 103; E-Value: 1e-50
Query Start/End: Original strand, 19 - 121
Target Start/End: Complemental strand, 51351233 - 51351131
Alignment:
| Q |
19 |
acagcagacaacagaattgctaaaatcgcatttaacagacacaaaatcacttcccatagtttccattagtaaaagcacacattaaatcacttgtgattca |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51351233 |
acagcagacaacagaattgctaaaatcgcatttaacagacacaaaatcacttcccatagtttccattagtaaaagcacacattaaatcacttgtgattca |
51351134 |
T |
|
| Q |
119 |
atc |
121 |
Q |
| |
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||| |
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| T |
51351133 |
atc |
51351131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 102; E-Value: 4e-50
Query Start/End: Original strand, 173 - 545
Target Start/End: Complemental strand, 51360494 - 51360104
Alignment:
| Q |
173 |
gagaaacttcagccacaact--gtggaaaacagagttgtttgcatgtcacaaaagctttgttcttctacgcttcgatatatacttgcttgcacttggtgg |
270 |
Q |
| |
|
||||||||||||||| |||| |||||||| |||||||||| |||| |||||||||||| ||||||||||||| ||||| |||||||||||||||||| |
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| T |
51360494 |
gagaaacttcagccagaactatgtggaaaaaagagttgtttacatggcacaaaagctttactcttctacgcttcaatata--cttgcttgcacttggtgg |
51360397 |
T |
|
| Q |
271 |
gtggtgaaatcaaaggctgtgttcatgctctaggagctgatcaatttgatgacaagaatccaaaggatcgtctccaactagctagcttctttgattggtt |
370 |
Q |
| |
|
||||| ||||| ||| ||||||| |||||||||||| |||||||||||||| | ||||||||| || |||||||||||| |||||||| ||||||| |
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| T |
51360396 |
-tggtggaatcagaggttgtgttcctgctctaggagcagatcaatttgatgatatgaatccaaaagaatatctccaactagcaagcttcttcaattggtt |
51360298 |
T |
|
| Q |
371 |
tctgt-------------------tagcttaggtgccacctttgtagttcatgttagatcacaattcaaatggtacaaaggttttcttatatctctctta |
451 |
Q |
| |
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| ||| ||||||||||| ||| ||||||||| ||||||| || ||| | |||||||||||||||||||||||||||| | |
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| T |
51360297 |
tttgtttagtattacaattggtgctagcttaggtgtcacttttgtagtttatgttagcacaatcttcgattggtacaaaggttttcttatatctctctca |
51360198 |
T |
|
| Q |
452 |
tatgcttctgctgcactaatttgcattgtttctggaaagagattctattgtaccccgaatccaggagggagtccattgttgggtattttacagg |
545 |
Q |
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| | || | ||||||| |||||||||||| ||||||||||||||||| ||| | | ||| || | ||||||||||||| |||||||||||| |
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| T |
51360197 |
tgttctgcctctgcacttatttgcattgttgctggaaagagattctatcgtaaacgaattcctggggagagtccattgttgagtattttacagg |
51360104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 119 - 160
Target Start/End: Complemental strand, 40020304 - 40020263
Alignment:
| Q |
119 |
atctataactactctttatatcaactccataaaagagatttg |
160 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40020304 |
atctataactactctttatatcaactccataaaagagatttg |
40020263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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