View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16715_low_10 (Length: 286)
Name: NF16715_low_10
Description: NF16715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16715_low_10 |
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| [»] scaffold0224 (1 HSPs) |
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Alignment Details
Target: scaffold0224 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: scaffold0224
Description:
Target: scaffold0224; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 79 - 272
Target Start/End: Complemental strand, 23823 - 23629
Alignment:
| Q |
79 |
ttttgttagtttggataaatgaattagactcc-ccggcttaaaacttttaaatagatggatatttgattttaatattttttgacaataattatttccctt |
177 |
Q |
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| T |
23823 |
ttttgttagtttggatagataaattagacacatccgacttaaagcttttaaatagatggatatttgattttaatagtttttgacaataattatttccctt |
23724 |
T |
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| Q |
178 |
gggagagtgtattctaaaacctaattgtgaagccttcttattctttctgacaattcggtttccaccattgaggtaattcttagatgtgcttattg |
272 |
Q |
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| T |
23723 |
cggagagtgtattctaaaacctaattatgaagccttcttattctttctgacaatttggtttccaccattgaggtaattcttagatgtgcttattg |
23629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 147; Significance: 1e-77; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 79 - 272
Target Start/End: Complemental strand, 42836742 - 42836548
Alignment:
| Q |
79 |
ttttgttagtttggataaatgaattagactcc-ccggcttaaaacttttaaatagatggatatttgattttaatattttttgacaataattatttccctt |
177 |
Q |
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| T |
42836742 |
ttttgttagtttggatagataaattagacacatccgacttaaagcttttaaatagatggatatttgattttaatagtttttgacaataattatttccctt |
42836643 |
T |
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| Q |
178 |
gggagagtgtattctaaaacctaattgtgaagccttcttattctttctgacaattcggtttccaccattgaggtaattcttagatgtgcttattg |
272 |
Q |
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| T |
42836642 |
cggagagtgtattctaaaacctaattatgaagccttcttattctttctgacaatttggtttccaccattgaggtaattcttagatgtgcttattg |
42836548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 113 - 270
Target Start/End: Complemental strand, 35241699 - 35241542
Alignment:
| Q |
113 |
ggcttaaaacttttaaatagatggatatttgattttaatattttttgacaataattatttcccttgggagagtgtattctaaaacctaattgtgaagcct |
212 |
Q |
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| T |
35241699 |
ggcttaaagcttttaaatagatgaatatttgattttaattgttttcgagaataactatttcccttcggagagtgccttagaaaacctaattgtgaagcct |
35241600 |
T |
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| Q |
213 |
tcttattctttctgacaattcggtttccaccattgaggtaattcttagatgtgcttat |
270 |
Q |
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| T |
35241599 |
tcttatactttctgacgattcagtttccaccattgaggtcatttttagatgtgcttat |
35241542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 79 - 126
Target Start/End: Complemental strand, 35241764 - 35241718
Alignment:
| Q |
79 |
ttttgttagtttggataaatgaattagactccccggcttaaaactttt |
126 |
Q |
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| T |
35241764 |
ttttgttagtttggatagatgaattagact-ccgggcttaaaactttt |
35241718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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